Estimation of the relative contributions to the electronic energy transfer rates based on Forster theory: The case of C-phycocyanin chromophores

被引:3
作者
Mishima, Kenji [1 ]
Shoji, Mitsuo [1 ,2 ]
Umena, Yasufumi [3 ]
Boero, Mauro [4 ]
Shigeta, Yasuteru [1 ]
机构
[1] Univ Tsukuba, Ctr Computat Sci, 1-1-1 Tennodai, Tsukuba, Ibaraki 3058577, Japan
[2] JST PRESTO, Saitama 3320012, Japan
[3] Jichi Med Univ, Dept Physiol, Div Biophys, Shimotsuke, Tochigi 3290498, Japan
[4] Univ Strasbourg, Inst Phys & Chim Mat, Strasbourg, France
基金
日本学术振兴会; 日本科学技术振兴机构;
关键词
photosynthesis; quantum chemistry calculations; transition dipole moments; absorption and emission spectra; intermolecular center-to-center distance; DENSITY-FUNCTIONAL THEORY; CRYSTAL-STRUCTURE ANALYSIS; CYANOBACTERIUM SYNECHOCOCCUS-VULCANUS; HEXAMERIC AGGREGATION STATE; X-RAY DIFFRACTION; AGMENELLUM-QUADRUPLICATUM; CRYPTOMONAD BILIPROTEINS; PICOSECOND FLUORESCENCE; ANABAENA-VARIABILIS; COMPUTER-SIMULATION;
D O I
10.2142/biophysico.bppb-v18.021
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
In the present study, we provide a reformulation of the theory originally proposed by Forster which allows for simple and convenient formulas useful to estimate the relative contributions of transition dipole moments of a donor and acceptor (chemical factors), their orientation factors (intermolecular structural factors), inter-molecular center-to-center distances (intermolecular structural factors), spectral overlaps of absorption and emission spectra (photophysical factors), and refractive index (material factor) to the excitation energy transfer (EET) rate constant. To benchmark their validity, we focused on the EET occurring in C-phycocyanin (C-PC) chromophores. To this aim, we resorted to quantum chemistry calculations to get optimized molecular structures of the C-PC chromophores within the density functional theory (DFT) framework. The absorption and emission spectra, as well as transition dipole moments, were computed by using the time-dependent DFT (TDDFT). Our method was applied to several types of C-PCs showing that the EET rates are determined by an interplay of their specific physical, chemical, and geometrical features. These results show that our formulas can become a useful tool for a reliable estimation of the relative contributions of the factors regulating the EET transfer rate.
引用
收藏
页码:196 / 214
页数:19
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