Noncovalent and Site-Directed Spin Labeling of Nucleic Acids

被引:40
|
作者
Shelke, Sandip A. [1 ]
Sigurdsson, Snorri Th. [1 ]
机构
[1] Univ Iceland, Inst Sci, IS-107 Reykjavik, Iceland
关键词
DNA; EPR spectroscopy; nucleic acids; receptor-ligand interactions; spin labels; SINGLE-NUCLEOTIDE POLYMORPHISMS; ELECTRON DOUBLE-RESONANCE; EPR SPECTROSCOPY; PARAMAGNETIC-RESONANCE; ABASIC SITES; METAL-ION; DNA; RNA; OLIGONUCLEOTIDES; DYNAMICS;
D O I
10.1002/anie.201002637
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Spin label parking: The rigid spin label ç (magenta), which is an analogue of cytidine, binds site-specifically to abasic sites in duplex DNAs, through hydrogen bonding to guanine (blue) and π stacking with the flanking base pairs. EPR spectroscopy shows complete binding of ç to the abasic site at low temperatures. This new spin-labeling strategy gives easy access to spin-labeled nucleic acids for structural studies by pulsed EPR techniques. © 2010 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim.
引用
收藏
页码:7984 / 7986
页数:3
相关论文
共 50 条
  • [1] Noncovalent and site-directed spin labeling of duplex RNA
    Kamble, Nilesh R.
    Graenz, Markus
    Prisner, Thomas F.
    Sigurdsson, Snorri Th.
    CHEMICAL COMMUNICATIONS, 2016, 52 (100) : 14442 - 14445
  • [2] Site-Directed Spin Labelling of Nucleic Acids
    Shelke, Sandip A.
    Sigurdsson, Snorri Th
    EUROPEAN JOURNAL OF ORGANIC CHEMISTRY, 2012, 2012 (12) : 2291 - 2301
  • [3] Site-Directed Spin-Labeling of Nucleic Acids by Click Chemistry: Detection of Abasic Sites in Duplex DNA by EPR Spectroscopy
    Jakobsen, Ulla
    Shelke, Sandip A.
    Vogel, Stefan
    Sigurdsson, Snorri Th.
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2010, 132 (30) : 10424 - 10428
  • [4] Site-Directed Spin Labeling of RNA with a Gem-Diethylisoindoline Spin Label: PELDOR, Relaxation, and Reduction Stability
    Wuebben, Christine
    Blume, Simon
    Abdullin, Dinar
    Brajtenbach, Dominik
    Haege, Florian
    Kath-Schorr, Stephanie
    Schiemann, Olav
    MOLECULES, 2019, 24 (24):
  • [5] Site-Directed Spin Labeling of RNA by Postsynthetic Modification of 2′-Amino Groups
    Saha, Subham
    Jagtap, Anil P.
    Sigurdsson, Snorri Th.
    ELECTRON PARAMAGNETIC RESONANCE INVESTIGATIONS OF BIOLOGICAL SYSTEMS BY USING SPIN LABELS, SPIN PROBES, AND INTRINSIC METAL IONS, PT A, 2015, 563 : 397 - 414
  • [6] Site-Directed Nitroxide Spin Labeling of Biopolymers
    Shelke, Sandip A.
    Sigurdsson, Snorri Th.
    STRUCTURAL INFORMATION FROM SPIN-LABELS AND INTRINSIC PARAMAGNETIC CENTRES IN THE BIOSCIENCES, 2014, 152 : 121 - 162
  • [7] Site-Directed Spin Labeling of Membrane Proteins
    Bordignon, Enrica
    EPR SPECTROSCOPY: APPLICATIONS IN CHEMISTRY AND BIOLOGY, 2012, 321 : 121 - 157
  • [8] Going the dHis-tance: Site-Directed Cu2+ Labeling of Proteins and Nucleic Acids
    Jarvi, Austin Gamble
    Bogetti, Xiaowei
    Singewald, Kevin
    Ghosh, Shreya
    Saxena, Sunil
    ACCOUNTS OF CHEMICAL RESEARCH, 2021, 54 (06) : 1481 - 1491
  • [9] Site-Directed Spin-Labeling Strategies and Electron Paramagnetic Resonance Spectroscopy for Large Riboswitches
    Esquiaqui, Jackie M.
    Sherman, Eileen M.
    Ye, Jing-Dong
    Fanucci, Gail E.
    RIBOSWITCH DISCOVERY, STRUCTURE AND FUNCTION, 2014, 549 : 287 - 311
  • [10] Expanding the Genetic Code for Site-Directed Spin-Labeling
    Braun, Theresa
    Drescher, Malte
    Summerer, Daniel
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2019, 20 (02)