Intramolecular hydrogen bonding to improve membrane permeability and absorption in beyond rule of five chemical space

被引:262
作者
Alex, Alexander [1 ]
Millan, David S. [1 ]
Perez, Manuel [1 ]
Wakenhut, Florian [1 ]
Whitlock, Gavin A. [1 ]
机构
[1] Pfizer Global Res & Dev, Sandwich Labs, Worldwide Med Chem, Sandwich CT13 9NJ, Kent, England
关键词
MARKETED ORAL-DRUGS; PROTEIN-PROTEIN INTERACTIONS; MOLECULAR-PROPERTIES; MEDICINAL CHEMISTRY; PROPERTY PROFILES; CYCLOSPORINE-A; CONFORMATION; ANTAGONIST; RECEPTOR; BIOAVAILABILITY;
D O I
10.1039/c1md00093d
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Utilising 'beyond rule of five' chemical space is becoming increasingly important in drug design, but is usually at odds with good oral absorption. The formation of intramolecular hydrogen bonds in drug molecules is hypothesised to shield polarity facilitating improved membrane permeability and intestinal absorption. NMR based evidence for intramolecular hydrogen bonding in several 'beyond rule of five' oral drugs is described. Furthermore, the propensity for these drugs to form intramolecular hydrogen bonds could be predicted for through modelling the lowest energy conformation in the gas phase. The modulation of apparent lipophilicity through intramolecular hydrogen bonding in these molecules is supported by intrinsic cell permeability and intestinal absorption data in rat and human.
引用
收藏
页码:669 / 674
页数:6
相关论文
共 32 条
[1]   Small-molecule inhibitors of protein-protein interactions: Progressing towards the dream [J].
Arkin, MR ;
Wells, JA .
NATURE REVIEWS DRUG DISCOVERY, 2004, 3 (04) :301-317
[2]   Utilization of an intramolecular hydrogen bond to increase the CNS penetration of an NK1 receptor antagonist [J].
Ashwood, VA ;
Field, MJ ;
Horwell, DC ;
Julien-Larose, C ;
Lewthwaite, RA ;
McCleary, S ;
Pritchard, MC ;
Raphy, J ;
Singh, L .
JOURNAL OF MEDICINAL CHEMISTRY, 2001, 44 (14) :2276-2285
[3]   Oral delivery of G protein-coupled receptor modulators: An explanation for the observed class difference [J].
Beaumont, K ;
Schmid, E ;
Smith, DA .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2005, 15 (16) :3658-3664
[4]   Drugs targeting protein-protein interactions [J].
Chene, Patrick .
CHEMMEDCHEM, 2006, 1 (04) :400-411
[5]   SOLVENT-DEPENDENT CONFORMATION AND HYDROGEN-BONDING CAPACITY OF CYCLOSPORINE-A - EVIDENCE FROM PARTITION-COEFFICIENTS AND MOLECULAR-DYNAMICS SIMULATIONS [J].
ELTAYAR, N ;
MARK, AE ;
VALLAT, P ;
BRUNNE, RM ;
TESTA, B ;
VANGUNSTEREN, WF .
JOURNAL OF MEDICINAL CHEMISTRY, 1993, 36 (24) :3757-3764
[6]   Fast calculation of molecular polar surface area as a sum of fragment-based contributions and its application to the prediction of drug transport properties [J].
Ertl, P ;
Rohde, B ;
Selzer, P .
JOURNAL OF MEDICINAL CHEMISTRY, 2000, 43 (20) :3714-3717
[7]   Do enthalpy and entropy distinguish first in class from best in class? [J].
Freire, Ernesto .
DRUG DISCOVERY TODAY, 2008, 13 (19-20) :869-874
[8]   Physiochemical drug properties associated with in vivo toxicological outcomes [J].
Hughes, Jason D. ;
Blagg, Julian ;
Price, David A. ;
Bailey, Simon ;
DeCrescenzo, Gary A. ;
Devraj, Rajesh V. ;
Ellsworth, Edmund ;
Fobian, Yvette M. ;
Gibbs, Michael E. ;
Gilles, Richard W. ;
Greene, Nigel ;
Huang, Enoch ;
Krieger-Burke, Teresa ;
Loesel, Jens ;
Wager, Travis ;
Whiteley, Larry ;
Zhang, Yao .
BIOORGANIC & MEDICINAL CHEMISTRY LETTERS, 2008, 18 (17) :4872-4875
[9]   REINVESTIGATION OF THE CONFORMATION OF CYCLOSPORINE-A IN CHLOROFORM [J].
KESSLER, H ;
KOCK, M ;
WEIN, T ;
GEHRKE, M .
HELVETICA CHIMICA ACTA, 1990, 73 (07) :1818-1832
[10]   Lipid bilayer topology of the transmembrane α-helix of M13 major coat protein and bilayer polarity profile by site-directed fluorescence spectroscopy [J].
Koehorst, RBM ;
Spruijt, RB ;
Vergeldt, FJ ;
Hemminga, MA .
BIOPHYSICAL JOURNAL, 2004, 87 (03) :1445-1455