Computation of electrostatic forces between solvated molecules determined by the Poisson-Boltzmann equation using a boundary element method

被引:66
|
作者
Lu, BZ [1 ]
Zhang, DQ
McCammon, JA
机构
[1] Univ Calif San Diego, Ctr Theoret Biol Phys, Dept Chem & Biochem, La Jolla, CA 92093 USA
[2] Univ Calif San Diego, Ctr Theoret Biol Phys, Howard Hughes Med Inst, La Jolla, CA 92093 USA
[3] Univ Calif San Diego, Howard Hughes Med Inst, Dept Chem & Biochem, Ctr Theoret Biol Phys,Dept Pharmacol, La Jolla, CA 92093 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2005年 / 122卷 / 21期
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
D O I
10.1063/1.1924448
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A rigorous approach is proposed to calculate the electrostatic forces among an arbitrary number of solvated molecules in ionic solution determined by the linearized Poisson-Boltzmann equation. The variational principle is used and implemented in the frame of a boundary element method (BEM). This approach does not require the calculation of the Maxwell stress tensor on the molecular surface, therefore it totally avoids the hypersingularity problem in the direct BEM whenever one needs to calculate the gradient of the surface potential or the stress tensor. This method provides an accurate and efficient way to calculate the full intermolecular electrostatic interaction energy and force, which could potentially be used in Brownian dynamics simulation of biomolecular association. The method has been tested on some simple cases to demonstrate its reliability and efficiency, and parts of the results are compared with analytical results and with those obtained by some known methods such as adaptive Poisson-Boltzmann solver.
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页数:7
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