ksrates: positioning whole-genome duplications relative to speciation events in KS distributions

被引：22
作者：
Sensalari, Cecilia [1 ,2 ]
Maere, Steven [1 ,2 ]
Lohaus, Rolf [1 ,2 ]
机构：
[1] Univ Ghent, Dept Plant Biotechnol & Bioinformat, B-9052 Ghent, Belgium
[2] VIB Ctr Plant Syst Biol, B-9052 Ghent, Belgium
来源：
BIOINFORMATICS | 2022年 / 38卷 / 02期
关键词：
EVOLUTION; HISTORY; PALEOPOLYPLOIDY;
D O I：
10.1093/bioinformatics/btab602
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
We present ksrates, a user-friendly command-line tool to position ancient whole-genome duplication events with respect to speciation events in a phylogeny by comparing paralog and ortholog K-S distributions derived from genomic or transcriptomic sequences, while adjusting for substitution rate differences among the lineages involved.
引用
收藏
页码：530 / 532
页数：3
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