eDNA metabarcoding for diet analyses of green sea turtles (Chelonia mydas)

被引:20
作者
Diaz-Abad, Lucia [1 ,8 ]
Bacco-Mannina, Natassia [1 ]
Madeira, Fernando Miguel [2 ]
Neiva, Joao [1 ]
Aires, Tania [1 ]
Serrao, Ester A. [1 ,3 ]
Regalla, Aissa [4 ]
Patricio, Ana R. [5 ,6 ]
Frade, Pedro R. [1 ,7 ]
机构
[1] Univ Algarve, CCMAR Ctr Marine Sci, CIMAR, Faro, Portugal
[2] Univ Lisbon, cE3c Ctr Ecol Evolut & Environm Changes, Fac Ciencias, Lisbon, Portugal
[3] CIBIO InBIO Ctr Invest Biodiversidade & Recursos, Vairao, Portugal
[4] IBAP Inst Biodiversidade & Areas Protegidas, Bissau, Guinea Bissau
[5] ISPA Inst Univ, MARE Marine & Environm Sci Ctr, Lisbon, Portugal
[6] Univ Exeter, Coll Life & Environm Sci, Ctr Ecol & Conservat, Exeter, Devon, England
[7] Nat Hist Museum Vienna, Vienna, Austria
[8] IMBRSea Univ Consortium, Int Master Sci Marine Biol Resources, IMBRSea, Ghent, Belgium
关键词
DNA barcoding; Guinea-Bissau; Macrophytes; Green turtle; Feeding ecology; Marine biodiversity; SEAGRASS HALODULE-WRIGHTII; FEEDING ECOLOGY; STABLE-ISOTOPES; CONSERVATION; HABITAT; REEFS; CALL; BAY;
D O I
10.1007/s00227-021-04002-x
中图分类号
Q17 [水生生物学];
学科分类号
071004 ;
摘要
Understanding sea turtle diets can help conservation planning, but their trophic ecology is complex due to life history characteristics such as ontogenetic shifts and large foraging ranges. Studying sea turtle diet is challenging, particularly where ecological foraging observations are not possible. Here, we test a new minimally invasive method for the identification of diet items in sea turtles. We fingerprinted diet content using DNA from esophageal and cloacal swab samples by metabarcoding the 18S rRNA gene. This approach was tested on samples collected from green turtles (Chelonia mydas) from a juvenile foraging aggregation in the Bijagos archipelago in Guinea-Bissau. Esophagus samples (n = 6) exhibited a higher dietary richness (11 +/- 5 amplicon sequence variants (ASVs) per sample; average +/- SD) than cloacal ones (n = 5; 8 +/- 2 ASVs). Overall, the diet was dominated by red macroalgae (Rhodophyta; 48.2 +/- 16.3% of all ASVs), with the main food item in the esophagus and cloaca being a red alga belonging to the Rhodymeniophycidae subclass (35.1 +/- 27.2%), followed by diatoms (Bacillariophyceae; 7.5 +/- 7.3%), which were presumably consumed incidentally. Seagrass and some invertebrates were also present. Feeding on red algae was corroborated by field observations and barcoding of food items available in the benthic habitat, validating the approach for identifying diet content. We conclude that identification of food items using metabarcoding of esophageal swabs is useful for a better understanding of the relationships between the feeding behavior of sea turtles and their environment.
引用
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页数:12
相关论文
共 70 条
[1]   18S rRNA V9 metabarcoding for diet characterization: a critical evaluation with two sympatric zooplanktivorous fish species [J].
Albaina, Aitor ;
Aguirre, Mikel ;
Abad, David ;
Santos, Maria ;
Estonba, Andone .
ECOLOGY AND EVOLUTION, 2016, 6 (06) :1809-1824
[2]  
Amorocho Diego F., 2007, Endangered Species Research, V3, P43, DOI 10.3354/esr003043
[3]   Multivariate dispersion as a measure of beta diversity [J].
Anderson, MJ ;
Ellingsen, KE ;
McArdle, BH .
ECOLOGY LETTERS, 2006, 9 (06) :683-693
[4]   Comparison of the diets of sympatric dugongs and green turtles on the Orman Reefs, Torres Strait, Australia [J].
André, J ;
Gyuris, E ;
Lawler, IR .
WILDLIFE RESEARCH, 2005, 32 (01) :53-62
[5]  
[Anonymous], 2004, Sea Turtles: a Complete Guide to their Biology, Behavior, and Conservation
[6]   New insights into the gut microbiome in loggerhead sea turtles Caretta caretta stranded on the Mediterranean coast [J].
Arizza, Vincenzo ;
Vecchioni, Luca ;
Caracappa, Santo ;
Sciurba, Giulia ;
Berlinghieri, Flavia ;
Gentile, Antonino ;
Persichetti, Maria Flaminia ;
Arculeo, Marco ;
Alduina, Rosa .
PLOS ONE, 2019, 14 (08)
[7]   Ontogenetic changes in diet and habitat use in green sea turtle (Chelonia mydas) life history [J].
Arthur, Karen E. ;
Boyle, Michelle C. ;
Limpus, Colin J. .
MARINE ECOLOGY PROGRESS SERIES, 2008, 362 :303-311
[8]   NUTRITION AND GRAZING BEHAVIOR OF THE GREEN TURTLE CHELONIA-MYDAS [J].
BJORNDAL, KA .
MARINE BIOLOGY, 1980, 56 (02) :147-154
[9]  
Bjorndal Karen A., 1997, P199
[10]   Cloacal swabs and alcohol bird specimens are good proxies for compositional analyses of gut microbial communities of Great tits (Parus major) [J].
Bodawatta, Kasun H. ;
Puzejova, Katerina ;
Sam, Katerina ;
Poulsen, Michael ;
Jonsson, Knud A. .
ANIMAL MICROBIOME, 2020, 2 (01)