Current status and future prospects of drug-target interaction prediction

被引:14
|
作者
Ru, Xiaoqing [1 ]
Ye, Xiucai [2 ,3 ]
Sakurai, Tetsuya [2 ,4 ]
Zou, Quan [5 ]
Xu, Lei [6 ]
Lin, Chen [7 ]
机构
[1] Univ Tsukuba, Tsukuba, Ibaraki, Japan
[2] Univ Tsukuba, Dept Comp Sci, Tsukuba, Ibaraki 3058577, Japan
[3] Univ Tsukuba, Ctr Artificial Intelligence Res C AIR, Tsukuba, Ibaraki, Japan
[4] Univ Tsukuba, C AIR, Tsukuba, Ibaraki, Japan
[5] Univ Elect Sci & Technol China, Hefei, Peoples R China
[6] Shenzhen Polytech, Sch Elect & Commun Engn, Shenzhen, Peoples R China
[7] Xiamen Univ, Xiamen, Peoples R China
关键词
drug-target interaction; drug development; drug repurposing; machine learning; INTERACTION NETWORKS; MOLECULAR DOCKING; CANDIDATE DRUGS; IDENTIFICATION; DISCOVERY; DEFINITIONS; INTEGRATION; SIMILARITY; DATABASE; RANKING;
D O I
10.1093/bfgp/elab031
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Drug-target interaction prediction is important for drug development and drug repurposing. Many computational methods have been proposed for drug-target interaction prediction due to their potential to the time and cost reduction. In this review, we introduce the molecular docking and machine learning-based methods, which have been widely applied to drug-target interaction prediction. Particularly, machine learning-based methods are divided into different types according to the data processing form and task type. For each type of method, we provide a specific description and propose some solutions to improve its capability. The knowledge of heterogeneous network and learning to rank are also summarized in this review. As far as we know, this is the first comprehensive review that summarizes the knowledge of heterogeneous network and learning to rank in the drug-target interaction prediction. Moreover, we propose three aspects that can be explored in depth for future research.
引用
收藏
页码:312 / 322
页数:11
相关论文
共 50 条
  • [11] Accurate and transferable drug-target interaction prediction with DrugLAMP
    Luo, Zhengchao
    Wu, Wei
    Sun, Qichen
    Wang, Jinzhuo
    BIOINFORMATICS, 2024, 40 (12)
  • [12] Application of Machine Learning for Drug-Target Interaction Prediction
    Xu, Lei
    Ru, Xiaoqing
    Song, Rong
    FRONTIERS IN GENETICS, 2021, 12
  • [13] ALADIN: A New Approach for Drug-Target Interaction Prediction
    Buza, Krisztian
    Peska, Ladislav
    MACHINE LEARNING AND KNOWLEDGE DISCOVERY IN DATABASES, ECML PKDD 2017, PT II, 2017, 10535 : 322 - 337
  • [14] Multitype Perception Method for Drug-Target Interaction Prediction
    Wang, Huan
    Liu, Ruigang
    Wang, Baijing
    Hong, Yifan
    Cui, Ziwen
    Ni, Qiufen
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2023, 20 (06) : 3489 - 3498
  • [15] Drug-target interaction prediction using artificial intelligence
    Yaseen, Baraa Taha
    Kurnaz, Sefer
    APPLIED NANOSCIENCE, 2021, 13 (5) : 3335 - 3345
  • [16] Associative learning mechanism for drug-target interaction prediction
    Zhu, Zhiqin
    Yao, Zheng
    Qi, Guanqiu
    Mazur, Neal
    Yang, Pan
    Cong, Baisen
    CAAI TRANSACTIONS ON INTELLIGENCE TECHNOLOGY, 2023, 8 (04) : 1558 - 1577
  • [17] Drug-target interaction prediction: A Bayesian ranking approach
    Peska, Ladislav
    Buza, Krisztian
    Koller, Julia
    COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, 2017, 152 : 15 - 21
  • [18] Survey on Computational Approaches for Drug-Target Interaction Prediction
    Zhang, Ran
    Wang, Xuezhi
    Wang, Jiajia
    Meng, Zhen
    Computer Engineering and Applications, 2023, 59 (12): : 1 - 13
  • [19] Drug-Target Interaction Prediction Based on Heterogeneous Networks
    Wang, Yingjie
    Chang, Huiyou
    Wang, Jihong
    Shi, Yue
    2018 2ND INTERNATIONAL CONFERENCE ON BIOMEDICAL ENGINEERING AND BIOINFORMATICS (ICBEB 2018), 2018, : 14 - 18
  • [20] A Distributed and Privatized Framework for Drug-Target Interaction Prediction
    Lan, Chao
    Chandrasekaran, Sai Nivedita
    Huan, Jun
    2016 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE (BIBM), 2016, : 731 - 734