Characterization of the gastrointestinal microbiota in health and inflammatory bowel disease

被引:89
作者
De Cruz, Peter [1 ,2 ]
Prideaux, Lani [1 ,2 ]
Wagner, Josef
Ng, Siew C. [3 ,4 ]
McSweeney, Chris
Kirkwood, Carl
Morrison, Mark
Kamm, Michael A. [1 ,2 ]
机构
[1] St Vincents Hosp, Melbourne, Vic 3065, Australia
[2] Univ Melbourne, Melbourne, Vic 3010, Australia
[3] Chinese Univ Hong Kong, Hong Kong, Hong Kong, Peoples R China
[4] Prince Wales Hosp, Hong Kong, Hong Kong, Peoples R China
关键词
enteric bacterial flora; inflammatory bowel disease; metagenomic; microbiota; 16S RIBOSOMAL-RNA; INVASIVE ESCHERICHIA-COLI; AVIUM SUBSPECIES PARATUBERCULOSIS; GRADIENT GEL-ELECTROPHORESIS; IN-SITU HYBRIDIZATION; MUCOSA-ASSOCIATED BACTERIA; FORMULA-FED INFANTS; MAGNETIC-RESONANCE-SPECTROSCOPY; ANTIBIOTIC COMBINATION THERAPY; BUTYRATE-PRODUCING BACTERIA;
D O I
10.1002/ibd.21751
中图分类号
R57 [消化系及腹部疾病];
学科分类号
摘要
The enteric bacterial flora play a key role in maintaining health. Inflammatory bowel disease is associated with quantitative and qualitative alterations in the microbiota. Early characterization of the microbiota involved culture-dependent techniques. The advent of metagenomic techniques, however, allows for structural and functional characterization using culture-independent methods. Changes in diversity, together with quantitative alterations in specific bacterial species, have been identified. The functional significance of these changes, and their pathogenic role, remain to be elucidated. (Inflamm Bowel Dis 2011;)
引用
收藏
页码:372 / 390
页数:19
相关论文
共 324 条
[1]   Detection of Mycobacterium avium subspecies paratuberculosis from patients with Crohn's disease using nucleic acid-based techniques:: A systematic review and meta-analysis [J].
Abubakar, I. ;
Myhill, D. ;
Aliyu, S. H. ;
Hunter, P. R. .
INFLAMMATORY BOWEL DISEASES, 2008, 14 (03) :401-410
[2]   INTESTINAL COLONIZATION WITH ENTEROBACTERIACEAE IN PAKISTANI AND SWEDISH HOSPITAL-DELIVERED INFANTS [J].
ADLERBERTH, I ;
CARLSSON, B ;
DEMAN, P ;
JALIL, F ;
KHAN, SR ;
LARSSON, P ;
MELLANDER, L ;
SVANBORG, C ;
WOLD, AE ;
HANSON, LA .
ACTA PAEDIATRICA SCANDINAVICA, 1991, 80 (6-7) :602-610
[3]   Pyrosequencing: History, biochemistry and future [J].
Ahmadian, A ;
Ehn, M ;
Hober, S .
CLINICA CHIMICA ACTA, 2006, 363 (1-2) :83-94
[4]   Mucosa-associated bacterial diversity in relation to human terminal ileum and colonic biopsy samples [J].
Ahmed, Shakil ;
Macfarlane, George T. ;
Fite, Alemu ;
McBain, Andrew J. ;
Gilbert, Peter ;
Macfarlane, Sandra .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2007, 73 (22) :7435-7442
[5]   Molecular diversity, cultivation, and improved detection by fluorescent in situ hybridization of a dominant group of human gut bacteria related to Roseburia spp. or Eubacterium rectale [J].
Aminov, Rustam I. ;
Walker, Alan W. ;
Duncan, Sylvia H. ;
Harmsen, Hermie J. M. ;
Welling, Gjalt W. ;
Flint, Harry J. .
APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (09) :6371-6376
[6]   Imbalances in dietary consumption of fatty acids, vegetables, and fruits are associated with risk for crohn's disease in children [J].
Amre, Devendra K. ;
D'Souza, Savio ;
Morgan, Kenneth ;
Seidman, Gillian ;
Lambrette, Philippe ;
Grimard, Guy ;
Israel, David ;
Mack, David ;
Ghadirian, Parviz ;
Deslandres, Colette ;
Chotard, Virginie ;
Budai, Balint ;
Law, Liliane ;
Levy, Emile ;
Seidman, Ernest G. .
AMERICAN JOURNAL OF GASTROENTEROLOGY, 2007, 102 (09) :2016-2025
[7]   Comparative Analysis of Human Gut Microbiota by Barcoded Pyrosequencing [J].
Andersson, Anders F. ;
Lindberg, Mathilda ;
Jakobsson, Hedvig ;
Backhed, Fredrik ;
Nyren, Pal ;
Engstrand, Lars .
PLOS ONE, 2008, 3 (07)
[8]  
Andoh A, 2011, J GASTROENTEROL
[9]   Terminal restriction fragment length polymorphism analysis of the diversity of fecal microbiota in patients with ulcerative colitis [J].
Andoh, Akira ;
Sakata, Shinji ;
Koizumi, Yuhsuke ;
Mitsuyama, Keiichi ;
Fujiyoma, Yoshihide ;
Benno, Yoshimi .
INFLAMMATORY BOWEL DISEASES, 2007, 13 (08) :955-962
[10]   The discovery and validation of colorectal cancer biomarkers [J].
Ang, Ching-Seng ;
Phung, Jason ;
Nice, Edouard C. .
BIOMEDICAL CHROMATOGRAPHY, 2011, 25 (1-2) :82-99