Backbone and side-chain 13C and 15N signal assignments of the α-spectrin SH3 domain by magic angle spinning solid-state NMR at 17.6 tesla

被引:0
|
作者
Pauli, J
Baldus, M
van Rossum, B
de Groot, H
Oschkinat, H
机构
[1] Leiden Univ, Gorlaeus Labs, NL-2300 RA Leiden, Netherlands
[2] Dr B Van Rossum Forschungsinst Mol Pharmakol, D-13125 Berlin, Germany
关键词
NMR spectroscopy; protein structures; SH3; domains; solid-state structures; spectrin;
D O I
10.1002/1439-7633(20010401)2:4<272::AID-CBIC272>3.3.CO;2-U
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The backbone and side-chain C-13 and N-15 signals of a solid 62-residue (u-C-13,N-15)-labelled protein containing the alpha -spectrin SH3 domain were assigned by two-dimensional (2D) magic angle spinning (MAS) N-15- C-13 and C-13- C-13 dipolar correlation spectroscopy at 17.6 T. The side-chain signal sets of the individual amino acids were identified by 2D C-13-C-13 proton-driven spin diffusion and dipolar recoupling experiments. Correlations to the respective backbone nitrogen signals were established by 2D NCACX (CX = any carbon atom) experiments, which contain a proton - nitrogen and a nitrogen-carbon cross-polarisation step followed by a carbon-carbon homonuclear transfer unit Interresidue correlations leading to sequence-specific assignments were obtained from 2D NCOCX experiments. The assignment is nearly complete for the SH3 domain residues 7-61, while the signals of the N- and C-terminal residues 1-6 and 62, respectively, outside the domain boundaries are not detected in our MAS spectra. The resolution observed in these spectra raises expectations that receptor-bound protein ligands and slightly larger proteins (up to 20 kDa) can be readily assigned in the near future by using three-dimensional versions of the applied or analogous techniques.
引用
收藏
页码:272 / 281
页数:10
相关论文
共 50 条
  • [1] Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy
    A. J. van Gammeren
    F. B. Hulsbergen
    J. G. Hollander
    H. J. M. de Groot
    Journal of Biomolecular NMR, 2005, 31 : 279 - 293
  • [2] Residual backbone and side-chain 13C and 15N resonance assignments of the intrinsic transmembrane light-harvesting 2 protein complex by solid-state Magic Angle Spinning NMR spectroscopy
    van Gammeren, AJ
    Hulsbergen, FB
    Hollander, JG
    de Groot, HJM
    JOURNAL OF BIOMOLECULAR NMR, 2005, 31 (04) : 279 - 293
  • [3] Solid-state NMR study of the SH3 domain of α-spectrin:: application of 13C-15N TEDOR and REDOR
    Macholl, S
    Sack, I
    Limbach, HH
    Pauli, J
    Kelly, M
    Buntkowsky, G
    MAGNETIC RESONANCE IN CHEMISTRY, 2000, 38 (07) : 596 - 603
  • [4] Backbone and side-chain 1H, 13C, and 15N NMR assignments of the N-terminal domain of Escherichia coli LpoA
    Jean, Nicolas L.
    Bougault, Catherine
    Derouaux, Adeline
    Callens, Gilles
    Vollmer, Waldemar
    Simorre, Jean-Pierre
    BIOMOLECULAR NMR ASSIGNMENTS, 2015, 9 (01) : 65 - 69
  • [5] Backbone and side-chain 1H, 13C, and 15N NMR assignments of the N-terminal domain of Escherichia coli LpoA
    Nicolas L. Jean
    Catherine Bougault
    Adeline Derouaux
    Gilles Callens
    Waldemar Vollmer
    Jean-Pierre Simorre
    Biomolecular NMR Assignments, 2015, 9 : 65 - 69
  • [6] 1H, 13C, 15N backbone and side-chain resonance assignments of rat angiogenin
    Chung-Kyung Lee
    Kwon Joo Yeo
    Eunha Hwang
    Hae-Kap Cheong
    Biomolecular NMR Assignments, 2013, 7 : 89 - 92
  • [7] 1H, 13C, 15N backbone and side-chain resonance assignments of rat angiogenin
    Lee, Chung-Kyung
    Yeo, Kwon Joo
    Hwang, Eunha
    Cheong, Hae-Kap
    BIOMOLECULAR NMR ASSIGNMENTS, 2013, 7 (01) : 89 - 92
  • [8] Backbone and side-chain 1H, 15N, and 13C assignments for the β domain of the bacterial cell division protein DivIB
    Robson, SA
    Gorbatyuk, VY
    Maciejewski, MW
    King, GF
    JOURNAL OF BIOMOLECULAR NMR, 2005, 31 (03) : 261 - 262
  • [9] Triosephosphate Isomerase: 15N and 13C Chemical Shift Assignments and Conformational Change upon Ligand Binding by Magic-Angle Spinning Solid-State NMR Spectroscopy
    Xu, Yimin
    Lorieau, Justin
    McDermott, Ann E.
    JOURNAL OF MOLECULAR BIOLOGY, 2010, 397 (01) : 233 - 248
  • [10] Backbone and side-chain 1H, 15N, and 13C resonance assignments of Norwalk virus protease
    Takahashi, Daisuke
    Kim, Yunjeong
    Chang, Kyeong-Ok
    Anbanandam, Asokan
    Prakash, Om
    BIOMOLECULAR NMR ASSIGNMENTS, 2012, 6 (01) : 19 - 21