Multi-Peptide Adsorption on Uncharged Solid Surfaces: A Coarse-Grained Simulation Study

被引:5
作者
Qiu, Ruosang [1 ,2 ]
Xiao, Jie [1 ]
Chen, Xiao Dong [1 ]
机构
[1] Soochow Univ, Coll Chem Chem Engn & Mat Sci, China Australia Joint Res Ctr Future Dairy Mfg, Sch Chem & Environm Engn, Suzhou 215123, Peoples R China
[2] Monash Univ, Dept Chem Engn, Clayton, Vic 3800, Australia
基金
中国国家自然科学基金;
关键词
Peptide chains; Aggregates; Adsorption; Coarse-grained simulation; STAINLESS-STEEL SURFACE; WHEY-PROTEIN GELS; MOLECULAR-DYNAMICS; MONTE-CARLO; MUNICIPAL SLUDGES; DE-WATERABILITY; POLYMER-CHAINS; FORCE-FIELD; MODEL; MECHANISMS;
D O I
10.1016/j.eng.2018.12.012
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
On-aim control of protein adsorption onto a solid surface remains challenging due to the complex interactions involved in this process. Through computational simulation, it is possible to gain molecular-level mechanistic insight into the movement of proteins at the water-solid interface, which allows better prediction of protein behaviors in adsorption and fouling systems. In this work, a mesoscale coarse-grained simulation method was used to investigate the aggregation and adsorption processes of multiple 12-alanine (12-Ala) hydrophobic peptides onto a gold surface. It was observed that around half (46.6%) of the 12-Ala peptide chains could form aggregates. 30.0% of the individual peptides were rapidly adsorbed onto the solid surface; after a crawling process on the surface, some of these (51.0%) merged into each other or merged with floating peptides to form adsorbed aggregates. The change in the solid-liquid interface due to peptide deposition has a potential influence on the further adsorption of single peptide chains and aggregates in the bulk water. Overall, the findings from this work help to reveal the mechanism of multi-peptide adsorption, and consequentially build a basis for the understanding of multi-protein adsorption onto a solid surface. (C) 2020 THE AUTHORS. Published by Elsevier LTD on behalf of Chinese Academy of Engineering and Higher Education Press Limited Company.
引用
收藏
页码:186 / 195
页数:10
相关论文
共 67 条
[41]   Conformational Response to Solvent Interaction and Temperature of a Protein (Histone h3.1) by a Multi-Grained Monte Carlo Simulation [J].
Pandey, Ras B. ;
Farmer, Barry L. .
PLOS ONE, 2013, 8 (10)
[42]   A Hierarchical Coarse-Grained (All-Atom-to-All-Residue) Computer Simulation Approach: Self-Assembly of Peptides [J].
Pandey, Ras B. ;
Kuang, Zhifeng ;
Farmer, Barry L. .
PLOS ONE, 2013, 8 (08)
[43]   Random Coil to Globular Thermal Response of a Protein (H3.1) with Three Knowledge-Based Coarse-Grained Potentials [J].
Pandey, Ras B. ;
Farmer, Barry L. .
PLOS ONE, 2012, 7 (11)
[44]   Layer of Clay Platelets in a Peptide Matrix: Binding, Encapsulation, and Morphology [J].
Pandey, Ras B. ;
Heinz, Hendrik ;
Farmer, Barry L. ;
Drummy, Lawrence F. ;
Jones, Sharon E. ;
Vaia, Richard A. ;
Naik, Rajesh R. .
JOURNAL OF POLYMER SCIENCE PART B-POLYMER PHYSICS, 2010, 48 (24) :2566-2574
[45]   CRYSTAL-STRUCTURE AND PAIR POTENTIALS - A MOLECULAR-DYNAMICS STUDY [J].
PARRINELLO, M ;
RAHMAN, A .
PHYSICAL REVIEW LETTERS, 1980, 45 (14) :1196-1199
[46]   Molecular-Level Understanding of Protein Adsorption at the Interface between Water and a Strongly Interacting Uncharged Solid Surface [J].
Penna, Matthew J. ;
Mijajlovic, Milan ;
Biggs, Mark J. .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2014, 136 (14) :5323-5331
[47]   Scalable molecular dynamics with NAMD [J].
Phillips, JC ;
Braun, R ;
Wang, W ;
Gumbart, J ;
Tajkhorshid, E ;
Villa, E ;
Chipot, C ;
Skeel, RD ;
Kalé, L ;
Schulten, K .
JOURNAL OF COMPUTATIONAL CHEMISTRY, 2005, 26 (16) :1781-1802
[48]   Further understanding of the biased diffusion for peptide adsorption on uncharged solid surfaces that strongly interact with water molecules [J].
Qiu, Ruosang ;
Xiao, Jie ;
Chen, Xiao Dong .
COLLOIDS AND SURFACES A-PHYSICOCHEMICAL AND ENGINEERING ASPECTS, 2017, 518 :197-207
[49]   Understanding protein adsorption phenomena at solid surfaces [J].
Rabe, Michael ;
Verdes, Dorinel ;
Seeger, Stefan .
ADVANCES IN COLLOID AND INTERFACE SCIENCE, 2011, 162 (1-2) :87-106
[50]   MONTE-CARLO STUDY OF LIVING POLYMERS WITH THE BOND-FLUCTUATION METHOD [J].
ROUAULT, Y ;
MILCHEV, A .
PHYSICAL REVIEW E, 1995, 51 (06) :5905-5910