Mitotic transcription and waves of gene reactivation during mitotic exit

被引:168
作者
Palozola, Katherine C. [1 ,2 ]
Donahue, Greg [2 ]
Liu, Hong [3 ,4 ]
Grant, Gregory R. [5 ]
Becker, Justin S. [1 ,2 ]
Cote, Allison [6 ]
Yu, Hongtao [7 ]
Raj, Arjun [6 ]
Zaret, Kenneth S. [1 ,2 ]
机构
[1] Univ Penn, Inst Regenerat Med, Perelman Sch Med, Philadelphia, PA 19104 USA
[2] Univ Penn, Perelman Sch Med, Dept Cell & Dev Biol, Philadelphia, PA 19104 USA
[3] Tulane Univ, Dept Biochem & Mol Biol, New Orleans, LA 70112 USA
[4] Tulane Univ, Tulane Ctr Aging, New Orleans, LA 70112 USA
[5] Univ Penn, Inst Translat Med & Therapeut, Perelman Sch Med, Dept Genet, Philadelphia, PA 19104 USA
[6] Univ Penn, Dept Bioengn, Philadelphia, PA 19104 USA
[7] Univ Texas Southwestern Med Ctr Dallas, Dept Pharmacol, Howard Hughes Med Inst, Dallas, TX 75390 USA
关键词
INTEGRATIVE ANALYSIS; CELL-CYCLE; RNA; BOOKMARKING; MITOSIS; CHROMOSOME; MARKS; DIFFERENTIATION; PLURIPOTENCY; REPRESSION;
D O I
10.1126/science.aal4671
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Although the genome is generally thought to be transcriptionally silent during mitosis, technical limitations have prevented sensitive mapping of transcription during mitosis and mitotic exit. Thus, the means by which the interphase expression pattern is transduced to daughter cells have been unclear. We used 5-ethynyluridine to pulse-label transcripts during mitosis and mitotic exit and found that many genes exhibit transcription during mitosis, as confirmed with fluorescein isothiocyanate-uridine 5'-triphosphate labeling, RNA fluorescence in situ hybridization, and quantitative reverse transcription polymerase chain reaction. The first round of transcription immediately after mitosis primarily activates genes involved in the growth and rebuilding of daughter cells, rather than cell type-specific functions. We propose that the cell's transcription pattern is largely retained at a low level through mitosis, whereas the amplitude of transcription observed in interphase is reestablished during mitotic exit.
引用
收藏
页码:119 / 122
页数:4
相关论文
共 30 条
[11]   Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources [J].
Huang, Da Wei ;
Sherman, Brad T. ;
Lempicki, Richard A. .
NATURE PROTOCOLS, 2009, 4 (01) :44-57
[12]   Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists [J].
Huang, Da Wei ;
Sherman, Brad T. ;
Lempicki, Richard A. .
NUCLEIC ACIDS RESEARCH, 2009, 37 (01) :1-13
[13]   Exploring RNA transcription and turnover in vivo by using click chemistry [J].
Jao, Cindy Y. ;
Salic, Adrian .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2008, 105 (41) :15779-15784
[14]   Tissue-Specific Mitotic Bookmarking by Hematopoietic Transcription Factor GATA1 [J].
Kadauke, Stephan ;
Udugama, Maheshi I. ;
Pawlicki, Jan M. ;
Achtman, Jordan C. ;
Jain, Deepti P. ;
Cheng, Yong ;
Hardison, Ross C. ;
Blobel, Gerd A. .
CELL, 2012, 150 (04) :725-737
[15]   Human mutations affect the epigenetic/bookmarking function of HNF1B [J].
Lerner, Jonathan ;
Bagattin, Alessia ;
Verdeguer, Francisco ;
Makinistoglu, Munevver P. ;
Garbay, Serge ;
Felix, Tristan ;
Heidet, Laurence ;
Pontoglio, Marco .
NUCLEIC ACIDS RESEARCH, 2016, 44 (17) :8097-8111
[16]   Integrative analysis of haplotype-resolved epigenomes across human tissues [J].
Leung, Danny ;
Jung, Inkyung ;
Rajagopal, Nisha ;
Schmitt, Anthony ;
Selvaraj, Siddarth ;
Lee, Ah Young ;
Yen, Chia-An ;
Lin, Shin ;
Lin, Yiing ;
Qiu, Yunjiang ;
Xie, Wei ;
Yue, Feng ;
Hariharan, Manoj ;
Ray, Pradipta ;
Kuan, Samantha ;
Edsall, Lee ;
Yang, Hongbo ;
Chi, Neil C. ;
Zhang, Michael Q. ;
Ecker, Joseph R. ;
Ren, Bing .
NATURE, 2015, 518 (7539) :350-354
[17]   Mitotic Transcriptional Activation: Clearance of Actively Engaged Pol II via Transcriptional Elongation Control in Mitosis [J].
Liang, Kaiwei ;
Woodfin, Ashley R. ;
Slaughter, Brian D. ;
Unruh, Jay R. ;
Box, Andrew C. ;
Rickels, Ryan A. ;
Gao, Xin ;
Haug, Jeffrey S. ;
Jaspersen, Sue L. ;
Shilatifard, Ali .
MOLECULAR CELL, 2015, 60 (03) :435-445
[18]   Mitotic Transcription Installs Sgo1 at Centromeres to Coordinate Chromosome Segregation [J].
Liu, Hong ;
Qu, Qianhui ;
Warrington, Ross ;
Rice, Allyson ;
Cheng, Ningyan ;
Yu, Hongtao .
MOLECULAR CELL, 2015, 59 (03) :426-436
[19]   TiGER: A database for tissue-specific gene expression and regulation [J].
Liu, Xiong ;
Yu, Xueping ;
Zack, Donald J. ;
Zhu, Heng ;
Qian, Jiang .
BMC BIOINFORMATICS, 2008, 9 (1)
[20]   Transcriptional landscape of the human cell cycle [J].
Liu, Yin ;
Chen, Sujun ;
Wang, Su ;
Soares, Fraser ;
Fischer, Martin ;
Meng, Feilong ;
Du, Zhou ;
Lin, Charles ;
Meyer, Clifford ;
DeCaprio, James A. ;
Brown, Myles ;
Liu, X. Shirley ;
He, Housheng Hansen .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2017, 114 (13) :3473-3478