Application of the RIMARC algorithm to a large data set of action potentials and clinical parameters for risk prediction of atrial fibrillation

被引:19
作者
Ravens, Ursula [1 ,2 ]
Katircioglu-Ozturk, Deniz [3 ,4 ]
Wettwer, Erich [1 ]
Christ, Torsten [1 ]
Dobrev, Dobromir [1 ]
Voigt, Niels [1 ]
Poulet, Claire [1 ]
Loose, Simone [1 ]
Simon, Jana [1 ]
Stein, Agnes [5 ]
Matschke, Klaus [6 ]
Knaut, Michael [6 ]
Oto, Emre [4 ]
Oto, Ali [7 ]
Guvenir, H. Altay
机构
[1] Tech Univ Dresden, Dept Pharmacol & Toxicol, Med Fac Carl Gustav Carus, D-01307 Dresden, Germany
[2] Tech Univ Dresden, Inst Pharmakol & Toxikol, D-01307 Dresden, Germany
[3] Middle E Tech Univ, Dept Med Informat, Inst Informat, TR-06531 Ankara, Turkey
[4] MITS, Ankara, Turkey
[5] Heart Ctr Dresden, Dept Anesthesiol, Dresden, Germany
[6] Heart Ctr Dresden, Clin Cardiac Surg, Dresden, Germany
[7] Hacettepe Univ Hosp, Dept Cardiol, Ankara, Turkey
关键词
Atrial fibrillation; Risk prediction; RIMARC algorithm; Human right atrial action potentials; Clinical parameters; HEART; ELECTROPHYSIOLOGY; POPULATION; CURRENTS; SHAPE;
D O I
10.1007/s11517-014-1232-0
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Ex vivo recorded action potentials (APs) in human right atrial tissue from patients in sinus rhythm (SR) or atrial fibrillation (AF) display a characteristic spike-and-dome or triangular shape, respectively, but variability is huge within each rhythm group. The aim of our study was to apply the machine-learning algorithm ranking instances by maximizing the area under the ROC curve (RIMARC) to a large data set of 480 APs combined with retrospectively collected general clinical parameters and to test whether the rules learned by the RIMARC algorithm can be used for accurately classifying the preoperative rhythm status. APs were included from 221 SR and 158 AF patients. During a learning phase, the RIMARC algorithm established a ranking order of 62 features by predictive value for SR or AF. The model was then challenged with an additional test set of features from 28 patients in whom rhythm status was blinded. The accuracy of the risk prediction for AF by the model was very good (0.93) when all features were used. Without the seven AP features, accuracy still reached 0.71. In conclusion, we have shown that training the machine-learning algorithm RIMARC with an experimental and clinical data set allows predicting a classification in a test data set with high accuracy. In a clinical setting, this approach may prove useful for finding hypothesis-generating associations between different parameters.
引用
收藏
页码:263 / 273
页数:11
相关论文
共 24 条
[1]   Experimentally calibrated population of models predicts and explains intersubject variability in cardiac cellular electrophysiology [J].
Britton, Oliver J. ;
Bueno-Orovio, Alfonso ;
Van Ammel, Karel ;
Lu, Hua Rong ;
Towart, Rob ;
Gallacher, David J. ;
Rodriguez, Blanca .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2013, 110 (23) :E2098-E2105
[2]  
BUSTAMANTE JO, 1982, CAN MED ASSOC J, V126, P791
[3]   The shape of human atrial action potential accounts for different frequency-related changes in vitro [J].
Dawodu, AA ;
Monti, F ;
Iwashiro, K ;
Schiariti, M ;
Chiavarelli, R ;
Puddu, PE .
INTERNATIONAL JOURNAL OF CARDIOLOGY, 1996, 54 (03) :237-249
[4]   Remodeling of cardiomyocyte ion channels in human atrial fibrillation [J].
Dobrev, D ;
Ravens, U .
BASIC RESEARCH IN CARDIOLOGY, 2003, 98 (03) :137-148
[5]   G-protein β3-subunit 825T allele is associated with enhanced human atrial inward rectifier potassium currents [J].
Dobrev, D ;
Wettwer, E ;
Himmel, HM ;
Kortner, A ;
Kuhlisch, E ;
Schüler, S ;
Siffert, W ;
Ravens, U .
CIRCULATION, 2000, 102 (06) :692-697
[6]   Computational modeling of the human atrial anatomy and electrophysiology [J].
Doessel, Olaf ;
Krueger, Martin W. ;
Weber, Frank M. ;
Wilhelms, Mathias ;
Seemann, Gunnar .
MEDICAL & BIOLOGICAL ENGINEERING & COMPUTING, 2012, 50 (08) :773-799
[7]  
Dorn A, 2012, BIOMED TECH BERL S, V57, P1
[8]   Mechanisms of perpetuation of atrial fibrillation in chronically dilated atria [J].
Eckstein, Jens ;
Verheule, Sander ;
de Groot, Natasja ;
Allessie, Maurits ;
Schotten, Ulrich .
PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2008, 97 (2-3) :435-451
[9]   ELECTROPHYSIOLOGIC PROPERTIES OF ISOLATED PREPARATIONS OF HUMAN ATRIAL MYOCARDIUM [J].
GELBAND, H ;
BUSH, HL ;
ROSEN, MR ;
MYERBURG, RJ ;
HOFFMAN, BF .
CIRCULATION RESEARCH, 1972, 30 (03) :293-&
[10]   Ranking Instances by Maximizing the Area under ROC Curve [J].
Guvenir, H. Altay ;
Kurtcephe, Murat .
IEEE TRANSACTIONS ON KNOWLEDGE AND DATA ENGINEERING, 2013, 25 (10) :2356-2366