A gene prognostic index from cellular senescence predicting metastasis and radioresistance for prostate cancer

被引:30
作者
Feng, Dechao [1 ]
Li, Dengxiong [1 ]
Shi, Xu [1 ]
Xiong, Qiao [1 ]
Zhang, Facai [1 ]
Wei, Qiang [1 ]
Yang, Lu [1 ]
机构
[1] Sichuan Univ, West China Hosp, Inst Urol, Dept Urol, Guoxue Xiang 37, Chengdu 610041, Sichuan, Peoples R China
基金
中国国家自然科学基金;
关键词
Cellular senescence; Prognostic index; Prostate cancer; Tumor immune microenvironment; Metastasis-free survival; Radioresistance; Immune checkpoint; EXPRESSION; RISK; MANAGEMENT; BIOPSIES;
D O I
10.1186/s12967-022-03459-8
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
Background Senescent cells have been identified in the aging prostate, and the senescence-associated secretory phenotype might be linked to prostate cancer (PCa). Thus, we established a cellular senescence-related gene prognostic index (CSGPI) to predict metastasis and radioresistance in PCa. Methods We used Lasso and Cox regression analysis to establish the CSGPI. Clinical correlation, external validation, functional enrichment analysis, drug and cell line analysis, and tumor immune environment analysis were conducted. All analyses were conducted with R version 3.6.3 and its suitable packages. Results We used ALCAM and ALDH2 to establish the CSGPI risk score. High-risk patients experienced a higher risk of metastasis than their counterparts (HR: 10.37, 95% CI 4.50-23.93, p < 0.001), consistent with the results in the TCGA database (HR: 1.60, 95% CI 1.03-2.47, p = 0.038). Furthermore, CSGPI had high diagnostic accuracy distinguishing radioresistance from no radioresistance (AUC: 0.938, 95% CI 0.834-1.000). GSEA showed that high-risk patients were highly associated with apoptosis, cell cycle, ribosome, base excision repair, aminoacyl-tRNA biosynthesis, and mismatch repair. For immune checkpoint analysis, we found that PDCD1LG2 and CD226 were expressed at significantly higher levels in patients with metastasis than in those without metastasis. In addition, higher expression of CD226 significantly increased the risk of metastasis (HR: 3.65, 95% CI 1.58-8.42, p = 0.006). We observed that AZD7762, PHA-793887, PI-103, and SNX-2112 might be sensitive to ALDH2 and ALCAM, and PC3 could be the potential cell line used to investigate the interaction among ALDH2, ALCAM, and the above drugs. Conclusions We found that CSGPI might serve as an effective biomarker predicting metastasis probability and radioresistance for PCa and proposed that immune evasion was involved in the process of PCa metastasis.
引用
收藏
页数:11
相关论文
共 48 条
  • [21] Validation of a Metastatic Assay using biopsies to improve risk stratification in patients with prostate cancer treated with radical radiation therapy
    Jain, S.
    Lyons, C. A.
    Walker, S. M.
    McQuaid, S.
    Hynes, S. O.
    Mitchell, D. M.
    Pang, B.
    Logan, G. E.
    McCavigan, A. M.
    O'Rourke, D.
    McArt, D. G.
    McDade, S. S.
    Mills, I. G.
    Prise, K. M.
    Knight, L. A.
    Steele, C. J.
    Medlow, P. W.
    Berge, V.
    Katz, B.
    Loblaw, D. A.
    Harkin, D. P.
    James, J. A.
    O'Sullivan, J. M.
    Kennedy, R. D.
    Waugh, D. J.
    [J]. ANNALS OF ONCOLOGY, 2018, 29 (01) : 215 - 222
  • [22] The maternal embryonic leucine zipper kinase (MELK) is upregulated in high-grade prostate cancer
    Kuner, Ruprecht
    Faelth, Maria
    Pressinotti, Nicole Chui
    Brase, Jan C.
    Puig, Sabrina Balaguer
    Metzger, Jennifer
    Gade, Stephan
    Schaefer, Georg
    Bartsch, Georg
    Steiner, Eberhard
    Klocker, Helmut
    Sueltmann, Holger
    [J]. JOURNAL OF MOLECULAR MEDICINE-JMM, 2013, 91 (02): : 237 - 248
  • [23] Context-dependent effects of cellular senescence in cancer development
    Lecot, Pacome
    Alimirah, Fatouma
    Desprez, Pierre-Yves
    Campisi, Judith
    Wiley, Christopher
    [J]. BRITISH JOURNAL OF CANCER, 2016, 114 (11) : 1180 - 1184
  • [24] Molecular signatures database (MSigDB) 3.0
    Liberzon, Arthur
    Subramanian, Aravind
    Pinchback, Reid
    Thorvaldsdottir, Helga
    Tamayo, Pablo
    Mesirov, Jill P.
    [J]. BIOINFORMATICS, 2011, 27 (12) : 1739 - 1740
  • [25] Ginger Phytochemicals Inhibit Cell Growth and Modulate Drug Resistance Factors in Docetaxel Resistant Prostate Cancer Cell
    Liu, Chi-Ming
    Kao, Chiu-Li
    Tseng, Yu-Ting
    Lo, Yi-Ching
    Chen, Chung-Yi
    [J]. MOLECULES, 2017, 22 (09)
  • [26] GSCALite: a web server for gene set cancer analysis
    Liu, Chun-Jie
    Hu, Fei-Fei
    Xia, Meng-Xuan
    Han, Leng
    Zhang, Qiong
    Guo, An-Yuan
    [J]. BIOINFORMATICS, 2018, 34 (21) : 3771 - 3772
  • [27] The Hallmarks of Aging
    Lopez-Otin, Carlos
    Blasco, Maria A.
    Partridge, Linda
    Serrano, Manuel
    Kroemer, Guido
    [J]. CELL, 2013, 153 (06) : 1194 - 1217
  • [28] PSA Doubling Time and Absolute PSA Predict Metastasis-free Survival in Men With Biochemically Recurrent Prostate Cancer After Radical Prostatectomy
    Markowski, Mark C.
    Chen, Yongmei
    Feng, Zhaoyong
    Cullen, Jennifer
    Trock, Bruce J.
    Suzman, Daniel
    Antonarakis, Emmanuel S.
    Paller, Channing J.
    Rosner, Inger
    Han, Misop
    Walsh, Patrick C.
    Partin, Alan W.
    Eisenberger, Mario
    [J]. CLINICAL GENITOURINARY CANCER, 2019, 17 (06) : 470 - +
  • [29] canSAR: update to the cancer translational research and drug discovery knowledgebase
    Mitsopoulos, Costas
    Di Micco, Patrizio
    Fernandez, Eloy Villasclaras
    Dolciami, Daniela
    Holt, Esty
    Mica, Ioan L.
    Coker, Elizabeth A.
    Tym, Joseph E.
    Campbell, James
    Che, Ka Hing
    Ozer, Bugra
    Kannas, Christos
    Antolin, Albert A.
    Workman, Paul
    Al-Lazikani, Bissan
    [J]. NUCLEIC ACIDS RESEARCH, 2021, 49 (D1) : D1074 - D1082
  • [30] DIANA-LncBase v2: indexing microRNA targets on non-coding transcripts
    Paraskevopoulou, Maria D.
    Vlachos, Ioannis S.
    Karagkouni, Dimitra
    Georgakilas, Georgios
    Kanellos, Ilias
    Vergoulis, Thanasis
    Zagganas, Konstantinos
    Tsanakas, Panayiotis
    Floros, Evangelos
    Dalamagas, Theodore
    Hatzigeorgiou, Artemis G.
    [J]. NUCLEIC ACIDS RESEARCH, 2016, 44 (D1) : D231 - D238