Discrimination of Korean Native Chicken Populations Using SNPs from mtDNA and MHC Polymorphisms

被引：16

作者：

Hoque, M. R. ^{[1
]}

Lee, S. H. ^{[2
]}

Jung, K. C. ^{[3
]}

Kang, B. S. ^{[4
]}

Park, M. N. ^{[5
]}

Lim, H. K. ^{[6
]}

Choi, K. D. ^{[6
]}

Lee, J. H. ^{[1
]}

机构：

[1] Chungnam Natl Univ, Dept Anim Sci & Biotechnol, Taejon 305764, South Korea

[2] RDA, Natl Inst Anim Sci, Hanwoo Expt Stn, Pyeongchang 232956, South Korea

[3] Natl Agr Prod Qual Management Serv, Gyungki 430824, South Korea

[4] RDA, Natl Inst Anim Sci, Poultry Sci Div, Cheonan 331801, South Korea

[5] RDA, Natl Inst Anim Sci, Anim Genom & Bioinformat Div, Suwon 441706, South Korea

[6] Gyeongsang Natl Univ, Div Appl Life Sci, Jinju 660701, South Korea

来源：

ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES | 2011年 / 24卷 / 12期

关键词：

mtDNA; LEI0258; Marker; Discrimination; Korean Native Chicken; MITOCHONDRIAL-DNA VARIATION; SEQUENCES; DIVERSITY; ORIGIN; IDENTIFICATION; EVOLUTION; JAPANESE; MARKERS;

D O I：

10.5713/ajas.2011.11144

中图分类号：

S8 [畜牧、动物医学、狩猎、蚕、蜂];

学科分类号：

0905 ;

摘要：

Korean native chickens are a very valuable chicken population in Korea and their prices are higher than that of commercial broilers. In order to discriminate two commercial Korean native chicken populations (CCP1 and CCP2), single nucleotide polymorphisms (SNPs) from mitochondrial (mt) DNA D-loop sequences and LEI0258 marker polymorphisms in the major histocompatibility complex (MHC) region were investigated. A total of 718 birds from nine populations were sampled and 432 mtDNA sequences were obtained. Of these, two commercial Korean native chicken populations (363 birds) were used for investigation of their genetic relationship and breed differentiation. The sequence data classified the chickens into 20 clades, with the largest number of birds represented in clade 1. Analysis of the clade distribution indicated the genetic diversity and relation among the populations. Based on the mtDNA sequence analysis, three selected SNPs from mtDNA polymorphisms were used for the breed identification. The combination of identification probability (Pi) between CCP1 and CCP2 using SNPs from mtDNA and LEI0258 marker polymorphisms was 86.9% and 86.1%, respectively, indicating the utility of these markers for breed identification. The results will be applicable in designing breeding and conservation strategies for the Korean native chicken populations and also used for the development of breed identification markers.

引用

页码：1637 / 1643

页数：7

共 25 条

[1] Differentiation of the raw material of the Iberian pig meat industry based on the use of amplified fragment length polymorphism [J].

Alves, E ;

Castellanos, C ;

Olivo, C ;

Silió, L ;

Rodríguez, C .

MEAT SCIENCE, 2002, 61 (02) :157-162

[2]

[Anonymous], 1997, AVIAN MOL EVOLUTION

[3]

AQUADRO CF, 1983, GENETICS, V103, P287

[4]

Baker Allan J., 1997, P51, DOI 10.1016/B978-012498315-1/50005-4

[5] MHC studies in nonmodel vertebrates: what have we learned about natural selection in 15 years? [J].

Bernatchez, L ;

Landry, C .

JOURNAL OF EVOLUTIONARY BIOLOGY, 2003, 16 (03) :363-377

[6]

CANN RL, 1984, GENETICS, V106, P479

[7] Characterization and evolution of the mitochondrial DNA control region in hornbills (Bucerotiformes) [J].

Delport, W ;

Ferguson, JWH ;

Bloomer, P .

JOURNAL OF MOLECULAR EVOLUTION, 2002, 54 (06) :794-806

[8]

Fu Yan, 2001, Acta Genetica Sinica, V28, P606

[9] Molecular genotype identification of the Gallus gallus major histocompatibility complex [J].

Fulton, Janet E. ;

Juul-Madsen, Helle R. ;

Ashwell, Christopher M. ;

McCarron, Amy M. ;

Arthur, James A. ;

O'Sullivan, Neil P. ;

Taylor, Robert L., Jr. .

IMMUNOGENETICS, 2006, 58 (5-6) :407-421

[10] The evolutionary origin of long-crowing chicken: its evolutionary relationship with fighting cocks disclosed by the mtDNA sequence analysis [J].

Komiyama, T ;

Ikeo, K ;

Gojobori, T .

GENE, 2004, 333 :91-99

← 1 2 3 →