Transcriptome and venom proteome of the box jellyfish Chironex fleckeri

被引:86
作者
Brinkman, Diane L. [1 ]
Jia, Xinying [2 ]
Potriquet, Jeremy [2 ]
Kumar, Dhirendra [2 ,3 ]
Dash, Debasis [3 ]
Kvaskoff, David [4 ]
Mulvenna, Jason [2 ,5 ]
机构
[1] Australian Inst Marine Sci, Townsville, Qld 4810, Australia
[2] QIMR Berghofer Med Res Inst, Infect Dis Program, Brisbane, Qld, Australia
[3] CSIR Inst Genom & Integrat Biol, GN Ramachandran Knowledge Ctr Genome Informat, New Delhi, India
[4] Univ Queensland, Royal Brisbane & Womens Hosp, Clin Res Ctr, Brisbane, Qld, Australia
[5] Univ Queensland, Sch Biomed Sci, Brisbane, Qld, Australia
来源
BMC GENOMICS | 2015年 / 16卷
基金
英国医学研究理事会;
关键词
Chironex fleckeri; Venom; Transcriptome; Proteome; RNA-SEQ DATA; PARTIAL-PURIFICATION; STATISTICAL-MODEL; MOLECULAR-CLONING; REFERENCE GENOME; PROTEINS; TOXINS; EXPRESSION; WASP; IDENTIFICATION;
D O I
10.1186/s12864-015-1568-3
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Background: The box jellyfish, Chironex fleckeri, is the largest and most dangerous cubozoan jellyfish to humans. It produces potent and rapid-acting venom and its sting causes severe localized and systemic effects that are potentially life-threatening. In this study, a combined transcriptomic and proteomic approach was used to identify C. fleckeri proteins that elicit toxic effects in envenoming. Results: More than 40,000,000 Illumina reads were used to de novo assemble similar to 34,000 contiguous cDNA sequences and similar to 20,000 proteins were predicted based on homology searches, protein motifs, gene ontology and biological pathway mapping. More than 170 potential toxin proteins were identified from the transcriptome on the basis of homology to known toxins in publicly available sequence databases. MS/MS analysis of C. fleckeri venom identified over 250 proteins, including a subset of the toxins predicted from analysis of the transcriptome. Potential toxins identified using MS/MS included metalloproteinases, an alpha-macroglobulin domain containing protein, two CRISP proteins and a turripeptide-like protease inhibitor. Nine novel examples of a taxonomically restricted family of potent cnidarian pore-forming toxins were also identified. Members of this toxin family are potently haemolytic and cause pain, inflammation, dermonecrosis, cardiovascular collapse and death in experimental animals, suggesting that these toxins are responsible for many of the symptoms of C. fleckeri envenomation. Conclusions: This study provides the first overview of a box jellyfish transcriptome which, coupled with venom proteomics data, enhances our current understanding of box jellyfish venom composition and the molecular structure and function of cnidarian toxins. The generated data represent a useful resource to guide future comparative studies, novel protein/peptide discovery and the development of more effective treatments for jellyfish stings in humans. (Length: 300).
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页数:15
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