Development of EST-microsatellites from the cycad Cycas rumphii, and their use in the recently endangered Cycas micronesica

被引:18
作者
Cibrian-Jaramillo, Angelica [1 ,2 ]
Marler, Thomas E. [3 ]
DeSalle, Rob [2 ]
Brenner, Eric D. [1 ]
机构
[1] New York Bot Garden, Bronx, NY 10458 USA
[2] Amer Museum Nat Hist, Sackler Inst Comparat Genom, New York, NY 10024 USA
[3] Univ Guam, Coll Nat & Appl Sci, Western Pacific Trop Res Ctr, Mangilao, GU 96923 USA
关键词
cycad; Cycas micronesica; EST-STRS; invasives;
D O I
10.1007/s10592-007-9447-3
中图分类号
X176 [生物多样性保护];
学科分类号
090705 ;
摘要
We developed a set of 12 EST-microsatellite markers (EST-STRs) from Cycas rumphii Miq. and tested them on an ex situ collection of the endangered Cycas micronesica K.D. Hill. The number of alleles per locus in both species ranged from 1 to 15. Observed and expected heterozygosities ranged from 0.000 to 0.842, and 0.000 to 0.883, respectively. All primers amplified in four additional Cycas species. These markers are the first genome-enabled tools for cycad population level studies, and are now available to inform conservation efforts and disentangle the biogeographic history of the genus.
引用
收藏
页码:1051 / 1054
页数:4
相关论文
共 16 条
[1]   Cycad exposure and risk of dementia, MCI, and PDC in the Chamorro population of Guam [J].
Borenstein, A. R. ;
Mortimer, J. A. ;
Schofield, E. ;
Wu, Y. ;
Salmon, D. P. ;
Gamst, A. ;
Olichney, J. ;
Thal, L. J. ;
Silbert, L. ;
Kaye, J. ;
Craig, U. L. ;
Schellenberg, G. D. ;
Galasko, D. R. .
NEUROLOGY, 2007, 68 (21) :1764-1771
[2]   Expressed sequence tag analysis in Cycas, the most primitive living seed plant -: art. no. R78 [J].
Brenner, ED ;
Stevenson, DW ;
McCombie, RW ;
Katari, MS ;
Rudd, SA ;
Mayer, KFX ;
Palenchar, PM ;
Runko, SJ ;
Twigg, RW ;
Dai, GW ;
Martienssen, RA ;
Benfey, PN ;
Coruzzi, GM .
GENOME BIOLOGY, 2003, 4 (12)
[3]   Commentary on: return of the cycad hypothesis - does the amyotrophic lateral sclerosis/Parkinsonism dementia complex (ALS/PDC) of Guam have new implications for global health? [J].
Cox, P. A. ;
Banack, S. ;
Murch, S. ;
Sacks, O. .
NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY, 2006, 32 (06) :679-682
[4]   Arlequin (version 3.0): An integrated software package for population genetics data analysis [J].
Excoffier, Laurent ;
Laval, Guillaume ;
Schneider, Stefan .
EVOLUTIONARY BIOINFORMATICS, 2005, 1 :47-50
[5]  
HILL K, 2006, CYCAD PAGES
[6]  
HILL KD, 2004, CYCAD CLASSIFICATION
[7]   Return of the cycad hypothesis - does the amyotrophic lateral sclerosis/parkinsonism dementia complex (ALS/PDC) of Guam have new implications for global health? [J].
Ince, PG ;
Coddt, GA .
NEUROPATHOLOGY AND APPLIED NEUROBIOLOGY, 2005, 31 (04) :345-353
[8]  
Krawetz S, 2000, BIOINFORMATICS METHO
[9]   CYCADS - FOSSIL EVIDENCE OF LATE PALEOZOIC ORIGIN [J].
MAMAY, SH .
SCIENCE, 1969, 164 (3877) :295-&
[10]  
MARLER T, 2006, IUCN 2006