Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane

被引:75
作者
Krukenberg, Viola [1 ]
Harding, Katie [1 ,6 ]
Richter, Michael [1 ]
Gloeckner, Frank Oliver [1 ,2 ]
Gruber-Vodicka, Harald R. [1 ]
Adam, Birgit [1 ,7 ]
Berg, Jasmine S. [1 ]
Knittel, Katrin [1 ]
Tegetmeyer, Halina E. [3 ,4 ]
Boetius, Antje [1 ,3 ,5 ]
Wegener, Gunter [1 ,5 ]
机构
[1] Max Planck Inst Marine Microbiol, Bremen, Germany
[2] Jacobs Univ Bremen gGmbH, Bremen, Germany
[3] Helmholtz Ctr Polar & Marine Res, Alfred Wegener Inst, Bremerhaven, Germany
[4] Univ Bielefeld, Ctr Biotechnol, Bielefeld, Germany
[5] Univ Bremen, Ctr Marine Environm Sci, MARUM, Bremen, Germany
[6] Univ Calif Santa Cruz, Dept Ocean Sci, Santa Cruz, CA 95064 USA
[7] Max Planck Gesell Forderung Wissensch eV, Dept Commun, Munich, Germany
关键词
RIBOSOMAL-RNA; ELECTRON-TRANSFER; GUAYMAS BASIN; HYDROTHERMAL SEDIMENTS; MICROBIAL COMMUNITIES; MEMBRANE COMPLEX; SP-NOV; ARCHAEA; SEQUENCE; SULFUR;
D O I
10.1111/1462-2920.13283
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
The anaerobic oxidation ofmethane (AOM) ismediated by consortia of anaerobic methane-oxidizing archaea (ANME) and their specific partner bacteria. In thermophilic AOM consortia enriched from Guaymas Basin, members of the ANME-1 clade are associated with bacteria of the HotSeep-1 cluster, which likely perform direct electron exchange via nanowires. The partner bacterium was enriched with hydrogen as sole electron donor and sulfate as electron acceptor. Based on phylogenetic, genomic and metabolic characteristics we propose to name this chemolithoautotrophic sulfate reducer Candidatus Desulfofervidus auxilii. Ca.D. auxilii grows on hydrogen at temperatures between 50 degrees C and 70 degrees C with an activity optimum at 60 degrees C and doubling time of 4-6 days. Its genome draft encodes for canonical sulfate reduction, periplasmic and soluble hydrogenases and autotrophic carbon fixation via the reductive tricarboxylic acid cycle. The presence of genes for pili formation and cytochromes, and their similarity to genes of Geobacter spp., indicate a potential for syntrophic growth via direct interspecies electron transfer when the organism grows in consortia with ANME. This first ANME-free enrichment of an AOM partner bacterium and its characterization opens the perspective for a deeper understanding of syntrophy in anaerobic methane oxidation.
引用
收藏
页码:3073 / 3091
页数:19
相关论文
共 104 条
  • [1] Anaerobic oxidation of short-chain alkanes in hydrothermal sediments: potential influences on sulfur cycling and microbial diversity
    Adams, Melissa M.
    Hoarfrost, Adrienne L.
    Bose, Arpita
    Joye, Samantha B.
    Girguis, Peter R.
    [J]. FRONTIERS IN MICROBIOLOGY, 2013, 4
  • [2] Desulfovibrio hydrothermalis sp nov., a novel sulfate-reducing bacterium isolated from hydrothermal vents
    Alazard, D
    Dukan, S
    Urios, A
    Verhé, F
    Bouabida, N
    Morel, F
    Thomas, P
    Garcia, JL
    Ollivier, B
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 : 173 - 178
  • [3] Complete genome sequence of the thermophilic sulfate-reducing ocean bacterium Thermodesulfatator indicus type strain (CIR29812T)
    Anderson, Iain
    Saunders, Elizabeth
    Lapidus, Alla
    Nolan, Matt
    Lucas, Susan
    Tice, Hope
    Del Rio, Tijana Glavina
    Cheng, Jan-Fang
    Han, Cliff
    Tapia, Roxanne
    Goodwin, Lynne A.
    Pitluck, Sam
    Liolios, Konstantinos
    Mavromatis, Konstantinos
    Pagani, Ioanna
    Ivanova, Natalia
    Mikhailova, Natalia
    Pati, Amrita
    Chen, Amy
    Palaniappan, Krishna
    Land, Miriam
    Hauser, Loren
    Jeffries, Cynthia D.
    Chang, Yun-juan
    Brambilla, Evelyne-Marie
    Rohde, Manfred
    Spring, Stefan
    Goeker, Markus
    Detter, John C.
    Woyke, Tanja
    Bristow, James
    Eisen, Jonathan A.
    Markowitz, Victor
    Hugenholtz, Philip
    Kyrpides, Nikos C.
    Klenk, Hans-Peter
    [J]. STANDARDS IN GENOMIC SCIENCES, 2012, 6 (02): : 155 - 164
  • [4] [Anonymous], [No title captured]
  • [5] [Anonymous], GENOME ANNOUNC
  • [6] Desulfonauticus submarinus gen. nov., sp nov., a novel sulfate-reducing bacterium isolated from a deep-sea hydrothermal vent
    Audiffrin, C
    Cayol, JL
    Joulian, C
    Casalot, L
    Thomas, P
    Garcia, JL
    Ollivier, B
    [J]. INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY, 2003, 53 : 1585 - 1590
  • [7] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
    Bankevich, Anton
    Nurk, Sergey
    Antipov, Dmitry
    Gurevich, Alexey A.
    Dvorkin, Mikhail
    Kulikov, Alexander S.
    Lesin, Valery M.
    Nikolenko, Sergey I.
    Son Pham
    Prjibelski, Andrey D.
    Pyshkin, Alexey V.
    Sirotkin, Alexander V.
    Vyahhi, Nikolay
    Tesler, Glenn
    Alekseyev, Max A.
    Pevzner, Pavel A.
    [J]. JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) : 455 - 477
  • [8] Bateman A, 2002, NUCLEIC ACIDS RES, V30, P276, DOI [10.1093/nar/gkp985, 10.1093/nar/gkh121, 10.1093/nar/gkr1065]
  • [9] Non-classical protein secretion in bacteria
    Bendtsen, JD
    Kiemer, L
    Fausboll, A
    Brunak, S
    [J]. BMC MICROBIOLOGY, 2005, 5 (1)
  • [10] Anaerobic oxidation of methane at different temperature regimes in Guaymas Basin hydrothermal sediments
    Biddle, Jennifer F.
    Cardman, Zena
    Mendlovitz, Howard
    Albert, Daniel B.
    Lloyd, Karen G.
    Boetius, Antje
    Teske, Andreas
    [J]. ISME JOURNAL, 2012, 6 (05) : 1018 - 1031