New ways of looking at experimental phasing

被引:13
|
作者
Read, RJ [1 ]
机构
[1] Univ Cambridge, Cambridge Inst Med Res, Dept Haematol, Cambridge CB2 2XY, England
关键词
D O I
10.1107/S0907444903017918
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
In the original work by Blow and Crick, experimental phasing was formulated as a least-squares problem. For good data on good derivatives this approach works reasonably well, but we now attempt to extract more information from poorer data than in the past. As in many other crystallographic problems, the assumptions underlying the use of least squares for phasing are not satisfied, particularly for poor derivatives. The introduction of maximum likelihood (and more powerful computers) has led to substantial improvements. For computational convenience, these new methods still make many assumptions about the independence of different measurements and sources of error. A more general formulation for the probability distributions underlying likelihood-based methods for both experimental phasing and molecular-replacement phasing is reviewed. In the new formulation, all the structure factors associated with a particular hk1 are considered to be related by a complex multivariate normal distribution. When it is assumed that certain errors are independent, the general formulation reduces to current likelihood targets. However, the new formulation makes the necessary assumptions more explicit and points the way to improving phasing using both isomorphous and anomalous differences.
引用
收藏
页码:1891 / 1902
页数:12
相关论文
共 50 条
  • [1] Looking at Things in New Ways
    Koufogiannakis, Denise
    EVIDENCE BASED LIBRARY AND INFORMATION PRACTICE, 2010, 5 (01): : 1 - 2
  • [2] Looking at fossils in new ways
    Flannery, MC
    AMERICAN BIOLOGY TEACHER, 2005, 67 (01): : 47 - 51
  • [3] New ways of looking at synapses
    Frotscher M.
    Zhao S.
    Graber W.
    Drakew A.
    Studer D.
    Histochemistry and Cell Biology, 2007, 128 (2) : 91 - 96
  • [4] Fractals: New ways of looking at cities
    Nature, 6550 (574):
  • [5] NEW, OLD WAYS OF LOOKING AT TEACHING
    SCHERER, M
    EDUCATIONAL LEADERSHIP, 1993, 50 (06) : 8 - 9
  • [6] FRACTALS - NEW WAYS OF LOOKING AT CITIES
    BATTY, M
    NATURE, 1995, 377 (6550) : 574 - 574
  • [7] NEW WAYS OF LOOKING AT EARS - REPLY
    EHRLICH, MA
    PEDIATRICS, 1977, 60 (01) : 132 - 132
  • [8] NEW WAYS OF LOOKING AT KAFKA,FRANZ
    GILLI, Y
    PENSEE, 1981, (224): : 52 - 59
  • [9] New ways of looking at an old molecule
    Brent, J
    JOURNAL OF TOXICOLOGY-CLINICAL TOXICOLOGY, 1996, 34 (02): : 149 - 153