BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

被引：326

作者：

Larget, Bret R. ^{[1
,2
]}

Kotha, Satish K. ^{[3
]}

Dewey, Colin N. ^{[3
,4
]}

Ane, Cecile ^{[1
,2
]}

机构：

[1] Univ Wisconsin, Dept Stat, Madison, WI 53706 USA

[2] Univ Wisconsin, Dept Bot, Madison, WI 53706 USA

[3] Univ Wisconsin, Dept Comp Sci, Madison, WI 53706 USA

[4] Univ Wisconsin, Dept Biostat & Med Informat, Madison, WI 53706 USA

来源：

BIOINFORMATICS | 2010年 / 26卷 / 22期

基金：

美国国家科学基金会;

关键词：

SPECIES TREES; COALESCENCE; INFERENCE;

D O I：

10.1093/bioinformatics/btq539

中图分类号：

Q5 [生物化学];

学科分类号：

071010 ; 081704 ;

摘要：

Motivation: BUCKy is a C++ program that implements Bayesian concordance analysis. The method uses a non-parametric clustering of genes with compatible trees, and reconstructs the primary concordance tree from clades supported by the largest proportions of genes. A population tree with branch lengths in coalescent units is estimated from quartet concordance factors.

引用

页码：2910 / 2911

页数：2

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