The application of next-generation sequencing technologies to drug discovery and development

被引:25
作者
Woollard, Peter M. [1 ]
Mehta, Nalini A. L. [2 ]
Vamathevan, Jessica J. [1 ]
Van Horn, Stephanie [3 ]
Bonde, Bhushan K. [1 ]
Dow, David J. [2 ]
机构
[1] GlaxoSmithKline Res & Dev Ltd, Computat Biol Drug Discovery, Stevenage SG1 2NY, Herts, England
[2] GlaxoSmithKline Res & Dev Ltd, Mol & Cellular Technol, Platform Technol & Sci, Stevenage SG1 2NY, Herts, England
[3] GlaxoSmithKline Res & Dev Ltd, Mol & Cellular Technol, Platform Technol & Sci, Collegeville, PA 19426 USA
关键词
ACUTE MYELOID-LEUKEMIA; HUMAN GENOME; DNA; CANCER; VARIANTS; DIAGNOSTICS; GENES; MAPS;
D O I
10.1016/j.drudis.2011.03.006
中图分类号
R9 [药学];
学科分类号
1007 ;
摘要
Next-generation sequencing (NGS) technologies represent a paradigm shift in sequencing capability. The technology has already been extensively applied to biological research, resulting in significant and remarkable insights into the molecular biology of cells. In this review, we focus on current and potential applications of the technology as applied to the drug discovery and development process. Early applications have focused on the oncology and infectious disease therapeutic areas, with emerging use in biopharmaceutical development and vaccine production in evidence. Although this technology has great potential, significant challenges remain, particularly around the storage, transfer and analysis of the substantial data sets generated.
引用
收藏
页码:512 / 519
页数:8
相关论文
共 70 条
[1]   A map of human genome variation from population-scale sequencing [J].
Altshuler, David ;
Durbin, Richard M. ;
Abecasis, Goncalo R. ;
Bentley, David R. ;
Chakravarti, Aravinda ;
Clark, Andrew G. ;
Collins, Francis S. ;
De la Vega, Francisco M. ;
Donnelly, Peter ;
Egholm, Michael ;
Flicek, Paul ;
Gabriel, Stacey B. ;
Gibbs, Richard A. ;
Knoppers, Bartha M. ;
Lander, Eric S. ;
Lehrach, Hans ;
Mardis, Elaine R. ;
McVean, Gil A. ;
Nickerson, DebbieA. ;
Peltonen, Leena ;
Schafer, Alan J. ;
Sherry, Stephen T. ;
Wang, Jun ;
Wilson, Richard K. ;
Gibbs, Richard A. ;
Deiros, David ;
Metzker, Mike ;
Muzny, Donna ;
Reid, Jeff ;
Wheeler, David ;
Wang, Jun ;
Li, Jingxiang ;
Jian, Min ;
Li, Guoqing ;
Li, Ruiqiang ;
Liang, Huiqing ;
Tian, Geng ;
Wang, Bo ;
Wang, Jian ;
Wang, Wei ;
Yang, Huanming ;
Zhang, Xiuqing ;
Zheng, Huisong ;
Lander, Eric S. ;
Altshuler, David L. ;
Ambrogio, Lauren ;
Bloom, Toby ;
Cibulskis, Kristian ;
Fennell, Tim J. ;
Gabriel, Stacey B. .
NATURE, 2010, 467 (7319) :1061-1073
[2]   A diarylquinoline drug active on the ATP synthase of Mycobacterium tuberculosis [J].
Andries, K ;
Verhasselt, P ;
Guillemont, J ;
Göhlmann, HWH ;
Neefs, JM ;
Winkler, H ;
Van Gestel, J ;
Timmerman, P ;
Zhu, M ;
Lee, E ;
Williams, P ;
de Chaffoy, D ;
Huitric, E ;
Hoffner, S ;
Cambau, E ;
Truffot-Pernot, C ;
Lounis, N ;
Jarlier, V .
SCIENCE, 2005, 307 (5707) :223-227
[3]   Detection of low-frequency pretherapy chemokine (CXC motif) receptor 4 (CXCR4)-using HIV-1 with ultra-deep pyrosequencing [J].
Archer, John ;
Braverman, Michael S. ;
Taillon, Bruce E. ;
Desany, Brian ;
James, Ian ;
Harrigan, P. Richard ;
Lewis, Marilyn ;
Robertson, David L. .
AIDS, 2009, 23 (10) :1209-1218
[4]  
AS E, 2009, PLOS ONE, V4, pE8338
[5]   Predictive, preventive, personalized and participatory medicine: back to the future [J].
Auffray, Charles ;
Charron, Dominique ;
Hood, Leroy .
GENOME MEDICINE, 2010, 2
[6]   Systems medicine: the future of medical genomics and healthcare [J].
Auffray, Charles ;
Chen, Zhu ;
Hood, Leroy .
GENOME MEDICINE, 2009, 1
[7]   Next-generation sequencing: adjusting to data overload [J].
Baker, Monya .
NATURE METHODS, 2010, 7 (07) :495-499
[8]   Epigenetic Changes in Ovarian Cancer [J].
Balch, Curt ;
Fang, Fang ;
Matei, Daniela E. ;
Huang, Tim H. -M. ;
Nephew, Kenneth P. .
ENDOCRINOLOGY, 2009, 150 (09) :4003-4011
[9]   Next Generation Sequencing of Serum Circulating Nucleic Acids from Patients with Invasive Ductal Breast Cancer Reveals Differences to Healthy and Nonmalignant Controls [J].
Beck, Julia ;
Umovitz, Howard B. ;
Mitchell, William M. ;
Schuetz, Ekkehard .
MOLECULAR CANCER RESEARCH, 2010, 8 (03) :335-342
[10]   Molecular basis of a linkage peak: exome sequencing and family-based analysis identify a rare genetic variant in the ADIPOQ gene in the IRAS Family Study [J].
Bowden, Donald W. ;
An, S. Sandy ;
Palmer, Nicholette D. ;
Brown, W. Mark ;
Norris, Jill M. ;
Haffner, Stephen M. ;
Hawkins, Gregory A. ;
Guo, Xiuqing ;
Rotter, Jerome I. ;
Chen, Y. -D. Ida ;
Wagenknecht, Lynne E. ;
Langefeld, Carl D. .
HUMAN MOLECULAR GENETICS, 2010, 19 (20) :4112-4120