Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action

被引:35
作者
Bergeron, Danny [1 ]
Fafard-Couture, Etienne [1 ]
Scott, Michelle S. [1 ]
机构
[1] Univ Sherbrooke, Fac Med & Sci Sante, Dept Biochim & Genom Fonct, Sherbrooke, PQ J1E 4K8, Canada
基金
加拿大健康研究院;
关键词
PRE-MESSENGER-RNA; NONCODING RNAS; SNORNA GENES; COMPUTATIONAL SCREEN; SECONDARY STRUCTURE; PRERIBOSOMAL RNA; INTRON; GUIDE; CELL; H/ACA;
D O I
10.1042/BST20191046
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Identified five decades ago amongst the most abundant cellular RNAs, small nucleolar RNAs (snoRNAs) were initially described as serving as guides for the methylation and pseudouridylation of ribosomal RNA through direct base pairing. In recent years, however, increasingly powerful high-throughput genomic approaches and strategies have led to the discovery of many new members of the family and surprising diversity in snoRNA functionality and mechanisms of action. SnoRNAs are now known to target RNAs of many biotypes for a wider range of modifications, interact with diverse binding partners, compete with other binders for functional interactions, recruit diverse players to targets and affect protein function and accessibility through direct interaction. This mini-review presents the continuing characterization of the snoRNome through the identification of new snoRNA members and the discovery of their mechanisms of action, revealing a highly versatile noncoding family playing central regulatory roles and connecting the main cellular processes.
引用
收藏
页码:645 / 656
页数:12
相关论文
共 82 条
[51]   RNA-Seq employing a novel rRNA depletion strategy reveals a rich repertoire of snoRNAs in Euglena gracilis including box C/D and -guide RNAs targeting the modification of rRNA extremities [J].
Moore, Ashley N. ;
McWatters, David C. ;
Hudson, Andrew J. ;
Russell, Anthony G. .
RNA BIOLOGY, 2018, 15 (10) :1309-1318
[52]   Psiscan: a computational approach to identify H/ACA-like and AGA-like non-coding RNA in trypanosomatid genomes [J].
Myslyuk, Inna ;
Doniger, Tirza ;
Horesh, Yair ;
Hury, Avraham ;
Hoffer, Ran ;
Ziporen, Yaara ;
Michaeli, Shulamit ;
Unger, Ron .
BMC BIOINFORMATICS, 2008, 9 (1)
[53]   Intron-encoded, antisense small nucleolar RNAs: The characterization of nine novel species points to their direct role as guides for the 2'-O-ribose methylation of rRNAs [J].
Nicoloso, M ;
Qu, LH ;
Michot, B ;
Bachellerie, JP .
JOURNAL OF MOLECULAR BIOLOGY, 1996, 260 (02) :178-195
[54]   RNA-seq of human reference RNA samples using a thermostable group II intron reverse transcriptase [J].
Nottingham, Ryan M. ;
Wu, Douglas C. ;
Qin, Yidan ;
Yao, Jun ;
Hunicke-Smith, Scott ;
Lambowitz, Alan M. .
RNA, 2016, 22 (04) :597-613
[55]   Analysis of Human Small Nucleolar RNAs (snoRNA) and the Development of snoRNA Modulator of Gene Expression Vectors [J].
Ono, Motoharu ;
Yamada, Kayo ;
Avolio, Fabio ;
Scott, Michelle S. ;
van Koningsbruggen, Silvana ;
Barton, Geoffrey J. ;
Lamond, Angus I. .
MOLECULAR BIOLOGY OF THE CELL, 2010, 21 (09) :1569-1584
[56]   Ectopic expression of Snord115 in choroid plexus interferes with editing but not splicing of 5-Ht2c receptor pre-mRNA in mice [J].
Raabe, Carsten A. ;
Voss, Reinhard ;
Kummerfeld, Delf-Magnus ;
Brosius, Juergen ;
Galiveti, Chenna R. ;
Wolters, Anna ;
Seggewiss, Jochen ;
Huge, Andreas ;
Skryabin, Boris, V ;
Rozhdestvensky, Timofey S. .
SCIENTIFIC REPORTS, 2019, 9 (1)
[57]   MONOCLONAL AUTOANTIBODY FROM A (NEW-ZEALAND BLACK X NEW-ZEALAND WHITE)F1 MOUSE AND SOME HUMAN SCLERODERMA SERA TARGET AN MR-34,000 NUCLEOLAR PROTEIN OF THE U3 RNP PARTICLE [J].
REIMER, G ;
POLLARD, KM ;
PENNING, CA ;
OCHS, RL ;
LISCHWE, MA ;
BUSCH, H ;
TAN, EM .
ARTHRITIS AND RHEUMATISM, 1987, 30 (07) :793-800
[58]   3 SMALL NUCLEOLAR RNAS OF UNIQUE NUCLEOTIDE-SEQUENCES [J].
RUFF, EA ;
RIMOLDI, OJ ;
RAGHU, B ;
ELICEIRI, GL .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1993, 90 (02) :635-638
[59]   A computational screen for mammalian pseudouridylation guide H/ACA RNAs [J].
Schattner, P ;
Barberan-Soler, S ;
Lowe, TM .
RNA, 2006, 12 (01) :15-25
[60]   Retroposed SNOfall -: A mammalian-wide comparison of platypus snoRNAs [J].
Schmitz, Juergen ;
Zemann, Anja ;
Churakov, Gennady ;
Kuhl, Heiner ;
Gruetzner, Frank ;
Reinhardt, Richard ;
Brosius, Juergen .
GENOME RESEARCH, 2008, 18 (06) :1005-1010