Small nucleolar RNAs: continuing identification of novel members and increasing diversity of their molecular mechanisms of action

被引:35
作者
Bergeron, Danny [1 ]
Fafard-Couture, Etienne [1 ]
Scott, Michelle S. [1 ]
机构
[1] Univ Sherbrooke, Fac Med & Sci Sante, Dept Biochim & Genom Fonct, Sherbrooke, PQ J1E 4K8, Canada
基金
加拿大健康研究院;
关键词
PRE-MESSENGER-RNA; NONCODING RNAS; SNORNA GENES; COMPUTATIONAL SCREEN; SECONDARY STRUCTURE; PRERIBOSOMAL RNA; INTRON; GUIDE; CELL; H/ACA;
D O I
10.1042/BST20191046
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Identified five decades ago amongst the most abundant cellular RNAs, small nucleolar RNAs (snoRNAs) were initially described as serving as guides for the methylation and pseudouridylation of ribosomal RNA through direct base pairing. In recent years, however, increasingly powerful high-throughput genomic approaches and strategies have led to the discovery of many new members of the family and surprising diversity in snoRNA functionality and mechanisms of action. SnoRNAs are now known to target RNAs of many biotypes for a wider range of modifications, interact with diverse binding partners, compete with other binders for functional interactions, recruit diverse players to targets and affect protein function and accessibility through direct interaction. This mini-review presents the continuing characterization of the snoRNome through the identification of new snoRNA members and the discovery of their mechanisms of action, revealing a highly versatile noncoding family playing central regulatory roles and connecting the main cellular processes.
引用
收藏
页码:645 / 656
页数:12
相关论文
共 82 条
[1]  
Agrisani Alberto, 2015, Non-Coding RNA, V1, P139, DOI 10.3390/ncrna1020139
[2]   In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation [J].
Aw, Jong Ghut Ashley ;
Shen, Yang ;
Wilm, Andreas ;
Sun, Miao ;
Lim, Xin Ni ;
Boon, Kum-Loong ;
Tapsin, Sidika ;
Chan, Yun-Shen ;
Tan, Cheng-Peow ;
Sim, Adelene Y. L. ;
Zhang, Tong ;
Susanto, Teodorus Theo ;
Fu, Zhiyan ;
Nagarajan, Niranjan ;
Wan, Yue .
MOLECULAR CELL, 2016, 62 (04) :603-617
[3]   RNA ribose methylation (2′-O-methylation): Occurrence, biosynthesis and biological functions [J].
Ayadi, Lilia ;
Galvanin, Adeline ;
Pichot, Florian ;
Marchand, Virginie ;
Motorin, Yuri .
BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS, 2019, 1862 (03) :253-269
[4]   The expanding snoRNA world [J].
Bachellerie, JP ;
Cavaillé, J ;
Hüttenhofer, A .
BIOCHIMIE, 2002, 84 (08) :775-790
[5]   The RNA world of the nucleolus: Two major families of small RNAs defined by different box elements with related functions [J].
Balakin, AG ;
Smith, L ;
Fournier, MJ .
CELL, 1996, 86 (05) :823-834
[6]   Identification of 66 box C/D snoRNAs in Arabidopsis thaliana:: Extensive gene duplications generated multiple isoforms predicting new ribosomal RNA 2′-O-methylation sites [J].
Barneche, F ;
Gaspin, C ;
Guyot, R ;
Echeverría, M .
JOURNAL OF MOLECULAR BIOLOGY, 2001, 311 (01) :57-73
[7]   PARP inhibitors: Clinical utility and possibilities of overcoming resistance [J].
Bitler, Benjamin G. ;
Watson, Zachary L. ;
Wheeler, Lindsay J. ;
Behbakht, Kian .
GYNECOLOGIC ONCOLOGY, 2017, 147 (03) :695-704
[8]   Reducing the structure bias of RNA-Seq reveals a large number of non-annotated non-coding RNA [J].
Boivin, Vincent ;
Reulet, Gaspard ;
Boisvert, Olivier ;
Couture, Sonia ;
Abou Elela, Sherif ;
Scott, Michelle S. .
NUCLEIC ACIDS RESEARCH, 2020, 48 (05) :2271-2286
[9]   The cellular landscape of mid-size noncoding RNA [J].
Boivin, Vincent ;
Faucher-Giguere, Laurence ;
Scott, Michelle ;
Abou-Elela, Sherif .
WILEY INTERDISCIPLINARY REVIEWS-RNA, 2019, 10 (04)
[10]   Simultaneous sequencing of coding and noncoding RNA reveals a human transcriptome dominated by a small number of highly expressed noncoding genes [J].
Boivin, Vincent ;
Deschamps-Francoeur, Gabrielle ;
Couture, Sonia ;
Nottingham, Ryan M. ;
Bouchard-Bourelle, Philia ;
Lambowitz, Alan M. ;
Scott, Michelle S. ;
Abou-Elela, Sherif .
RNA, 2018, 24 (07) :950-965