Chloroplast genome of Tillandsia landbeckii Phil. (Bromeliaceae) a species adapted to the hyper-arid conditions of the Atacama and Peruvian desert

被引：5

作者：

Cesar Chavez-Galarza, Julio ^{[1
,2
]}

Cardenas-Ninasivincha, Steffany ^{[3
]}

Contreras, Roberto ^{[4
]}

Ferro-Mauricio, Ruben ^{[1
]}

Huanca-Mamani, Wilson ^{[3
]}

机构：

[1] Inst Nacl Innovac Agr Av, Lab Invest Tecnol Cambio Climat, Lima, Peru

[2] Univ Nacl Barranca, Dept Acad Ciencias Basicas & Afines, Av Toribio de Luzuriaga 376, Barranca, Peru

[3] Univ Tarapaca, Fac Ciencias Agron, Lab Biol Mol Plantas, Casilla 6D, Arica, Chile

[4] Univ Atacama, Ctr Reg Invest & Desarrollo Sustentable Atacama C, Copiapo, Chile

来源：

MITOCHONDRIAL DNA PART B-RESOURCES | 2021年 / 6卷 / 12期

关键词：

Chloroplast genome; Tillandsia landbeckii; ALGORITHM; LOMAS;

D O I：

10.1080/23802359.2021.1997122

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Tillandsia landbeckii Phil. is a vulnerable species belonging to the terrestrial Bromeliaceae family; it is highly adapted to extremely hyper-arid conditions of the Atacama Desert and Peruvian deserts. In this study, we sequenced, assembled, and annotated its chloroplast genome. T. landbeckii chloroplast genome is 159,131 bp in length, containing a large single-copy region of 87,164 bp, a small single-copy region of 18,521 bp, and a pair of inverted repeat regions of 26,723 bp. The GC content of the chloroplast genome is 37.33%. It encodes a total of 132 genes, including 86 protein-coding genes, 38 tRNA genes and 8 rRNA genes. The phylogenetic tree indicates that T. landbeckii is placed within the Bromeliaceae family and has a close relationship with T. marconae with 100% support.

引用

页码：3375 / 3377

页数：3

共 14 条

[1] SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing [J].

Bankevich, Anton ;

Nurk, Sergey ;

Antipov, Dmitry ;

Gurevich, Alexey A. ;

Dvorkin, Mikhail ;

Kulikov, Alexander S. ;

Lesin, Valery M. ;

Nikolenko, Sergey I. ;

Son Pham ;

Prjibelski, Andrey D. ;

Pyshkin, Alexey V. ;

Sirotkin, Alexander V. ;

Vyahhi, Nikolay ;

Tesler, Glenn ;

Alekseyev, Max A. ;

Pevzner, Pavel A. .

JOURNAL OF COMPUTATIONAL BIOLOGY, 2012, 19 (05) :455-477

[2] jModelTest 2: more models, new heuristics and parallel computing [J].

Darriba, Diego ;

Taboada, Guillermo L. ;

Doallo, Ramon ;

Posada, David .

NATURE METHODS, 2012, 9 (08) :772-772

[3] NOVOPlasty: de novo assembly of organelle genomes from whole genome data [J].

Dierckxsens, Nicolas ;

Mardulyn, Patrick ;

Smits, Guillaume .

NUCLEIC ACIDS RESEARCH, 2017, 45 (04)

[4] MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability [J].

Katoh, Kazutaka ;

Standley, Daron M. .

MOLECULAR BIOLOGY AND EVOLUTION, 2013, 30 (04) :772-780

[5] IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies [J].

Lam-Tung Nguyen ;

Schmidt, Heiko A. ;

von Haeseler, Arndt ;

Bui Quang Minh .

MOLECULAR BIOLOGY AND EVOLUTION, 2015, 32 (01) :268-274

[6]

MMA, 2021, INV NAC ESP CHIL

[7] Geographical distribution of Tillandsia lomas in the Atacama Desert, northern Chile [J].

Pinto, R. ;

Barria, I. ;

Marquet, P. A. .

JOURNAL OF ARID ENVIRONMENTS, 2006, 65 (04) :543-552

[8]

Pinto R, 2005, TILLANDSIA NORTE CHI

[9]

Rundel PW, 1997, REV CHIL HIST NAT, V70, P341

[10] Ecological patterns in the Bromeliaceae of the lomas formations of Coastal Chile and Peru [J].

Rundel, PW ;

Dillon, MO .

PLANT SYSTEMATICS AND EVOLUTION, 1998, 212 (3-4) :261-278

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