Computational toxicology - A state of the science mini review

被引:106
作者
Kavlock, Robert J. [1 ]
Ankley, Gerald [2 ]
Blancato, Jerry [1 ]
Breen, Michael
Conolly, Rory [1 ]
Dix, David [1 ]
Houck, Keith [1 ]
Hubal, Elaine [1 ]
Judson, Richard [1 ]
Rabinowitz, James [1 ]
Richard, Ann [1 ]
Setzer, R. Woodrow [1 ]
Shah, Imran [1 ]
Villeneuve, Daniel [2 ]
Weber, Eric [3 ]
机构
[1] US EPA, Off Res & Dev, Natl Ctr Computat Toxicol, Res Triangle Pk, NC 27711 USA
[2] US EPA, Off Res & Dev, Natl Hlth Environm Effects Res Lab, Res Triangle Pk, NC 27711 USA
[3] US EPA, Off Res & Dev, Natl Exposure Res Lab, Res Triangle Pk, NC 27711 USA
基金
美国国家环境保护局;
关键词
bioinformatics; biological modeling; QSAR; systems biology; cheminformatics; high throughput screening; toxicity pathways;
D O I
10.1093/toxsci/kfm297
中图分类号
R99 [毒物学(毒理学)];
学科分类号
100405 ;
摘要
Advances in computer sciences and hardware combined with equally significant developments in molecular biology and chemistry are providing toxicology with a powerful new tool box. This tool box of computational models promises to increase the efficiency and the effectiveness by which the hazards and risks of environmental chemicals are determined. Computational toxicology focuses on applying these tools across many scales, including vastly increasing the numbers of chemicals and the types of biological interactions that can be evaluated. In addition, knowledge of toxicity pathways gathered within the tool box will be directly applicable to the study of the biological responses across a range of dose levels, including those more likely to be representative of exposures to the human population. Progress in this field will facilitate the transformative shift called for in the recent report on toxicology in the 21st century by the National Research Council. This review surveys the state of the art in many areas of computational toxicology and points to several hurdles that will be important to overcome as the field moves forward. Proof-of-concept studies need to clearly demonstrate the additional predictive power gained from these tools. More researchers need to become comfortable working with both the data generating tools and the computational modeling capabilities, and regulatory authorities must show a willingness to the embrace new approaches as they gain scientific acceptance. The next few years should witness the early fruits of these efforts, but as the National Research Council indicates, the paradigm shift will take a long term investment and commitment to reach full potential.
引用
收藏
页码:14 / 27
页数:14
相关论文
共 90 条
  • [1] Physicochemical modelling of cell signalling pathways
    Aldridge, Bree B.
    Burke, John M.
    Lauffenburger, Douglas A.
    Sorger, Peter K.
    [J]. NATURE CELL BIOLOGY, 2006, 8 (11) : 1195 - 1203
  • [2] Investigation of the impact of pharmacokinetic variability and uncertainty on risks predicted with a pharmacokinetic model for chloroform
    Allen, BC
    Covington, TR
    Clewell, HJ
    [J]. TOXICOLOGY, 1996, 111 (1-3) : 289 - 303
  • [3] A haplotype map of the human genome
    Altshuler, D
    Brooks, LD
    Chakravarti, A
    Collins, FS
    Daly, MJ
    Donnelly, P
    Gibbs, RA
    Belmont, JW
    Boudreau, A
    Leal, SM
    Hardenbol, P
    Pasternak, S
    Wheeler, DA
    Willis, TD
    Yu, FL
    Yang, HM
    Zeng, CQ
    Gao, Y
    Hu, HR
    Hu, WT
    Li, CH
    Lin, W
    Liu, SQ
    Pan, H
    Tang, XL
    Wang, J
    Wang, W
    Yu, J
    Zhang, B
    Zhang, QR
    Zhao, HB
    Zhao, H
    Zhou, J
    Gabriel, SB
    Barry, R
    Blumenstiel, B
    Camargo, A
    Defelice, M
    Faggart, M
    Goyette, M
    Gupta, S
    Moore, J
    Nguyen, H
    Onofrio, RC
    Parkin, M
    Roy, J
    Stahl, E
    Winchester, E
    Ziaugra, L
    Shen, Y
    [J]. NATURE, 2005, 437 (7063) : 1299 - 1320
  • [4] [Anonymous], EPA630R97001 US EPA
  • [5] Reductive dechlorination of 1,1,2,2-tetrachloroethane
    Arnold, WA
    Winget, P
    Cramer, CJ
    [J]. ENVIRONMENTAL SCIENCE & TECHNOLOGY, 2002, 36 (16) : 3536 - 3541
  • [6] BARTON HA, 2007, TOXICOL SCI, V4
  • [7] Mathematical and computational analysis of adaptation via feedback inhibition in signal transduction pathways
    Behar, Marcelo
    Hao, Nan
    Dohlman, Henrik G.
    Elston, Timothy C.
    [J]. BIOPHYSICAL JOURNAL, 2007, 93 (03) : 806 - 821
  • [8] Incorporating Results of Avian Toxicity Tests into a Model of Annual Reproductive Success
    Bennett, Richard S.
    Etterson, Matthew A.
    [J]. INTEGRATED ENVIRONMENTAL ASSESSMENT AND MANAGEMENT, 2007, 3 (04) : 498 - 507
  • [9] Berg Ellen L., 2006, Journal of Pharmacological and Toxicological Methods, V53, P67, DOI 10.1016/j.vascn.2005.06.003
  • [10] Preclinical cardiac safety assessment of pharmaceutical compounds using an integrated systems-based computer model of the heart
    Bottino, D
    Penland, RC
    Stamps, A
    Traebert, M
    Dumotier, D
    Georgieva, A
    Helmlinger, G
    Lett, GS
    [J]. PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY, 2006, 90 (1-3) : 414 - 443