The signature amidase from Sulfolobus solfataricus belongs to the CX3C subgroup of enzymes cleaving both amides and nitriles -: Ser195 and Cys145 are predicted to be the active site nucleophiles

被引:23
作者
Cilia, E
Fabbri, A
Uriani, M
Scialdone, GG
Ammendola, S
机构
[1] Ctr Biotechnol Bioprogress, Anagni, Italy
[2] AMBIOTEC SAS SS7, Cisterna Latina, Italy
关键词
D O I
10.1111/j.1742-4658.2005.04887.x
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The signature amidase from the extremophile archeum Sulfolobus solfataricus is an enantioselective enzyme that cleaves S-amides. We report here that this enzyme also converts nitriles in the corresponding organic acid, similarly to the well characterized amidase from Rhodococcus rhodochrous J1. The archaeal and rhodococcal enzymes belong to the signature amidases and contain the typical serine-glycine rich motif. They work at different optimal temperature, share a high sequence similarity and both contain an additional CX3C motif. To explain their dual specificity, we built a 3D model of the structure of the S. solfataricus enzyme, which suggests that, in addition to the classical catalytic Ser-cisSer-Lys, a putative additional Cys-cisSer-Lys catalytic site, likely to be responsible for nitrile hydrolysis, is present in these proteins. The results of random and site-directed mutagenesis experiments, as well as inhibition studies support our hypothesis.
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收藏
页码:4716 / 4724
页数:9
相关论文
共 23 条
[1]   Gapped BLAST and PSI-BLAST: a new generation of protein database search programs [J].
Altschul, SF ;
Madden, TL ;
Schaffer, AA ;
Zhang, JH ;
Zhang, Z ;
Miller, W ;
Lipman, DJ .
NUCLEIC ACIDS RESEARCH, 1997, 25 (17) :3389-3402
[2]   A rapid and sensitive fluorometric assay method for the determination of nitrilase activity [J].
Banerjee, A ;
Sharma, R ;
Banerjee, UC .
BIOTECHNOLOGY AND APPLIED BIOCHEMISTRY, 2003, 37 :289-293
[3]   Structural adaptations in a membrane enzyme that terminates endocannabinoid signaling [J].
Bracey, MH ;
Hanson, MA ;
Masuda, KR ;
Stevens, RC ;
Cravatt, BF .
SCIENCE, 2002, 298 (5599) :1793-1796
[4]   Catalysis in the nitrilase superfamily [J].
Brenner, C .
CURRENT OPINION IN STRUCTURAL BIOLOGY, 2002, 12 (06) :775-782
[5]   Study of the amidase signature group [J].
Chebrou, H ;
Bigey, F ;
Arnaud, A ;
Galzy, P .
BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY, 1996, 1298 (02) :285-293
[6]   Molecular and biochemical characterization of the recombinant amidase from hyperthermophilic archaeon Sulfolobus solfataricus [J].
d'Abusco, AS ;
Ammendola, S ;
Scandurra, R ;
Politi, L .
EXTREMOPHILES, 2001, 5 (03) :183-192
[7]   Protein secondary structure prediction based on position-specific scoring matrices [J].
Jones, DT .
JOURNAL OF MOLECULAR BIOLOGY, 1999, 292 (02) :195-202
[8]   IMPROVEMENTS IN PROTEIN SECONDARY STRUCTURE PREDICTION BY AN ENHANCED NEURAL NETWORK [J].
KNELLER, DG ;
COHEN, FE ;
LANGRIDGE, R .
JOURNAL OF MOLECULAR BIOLOGY, 1990, 214 (01) :171-182
[9]   The catalytic mechanism of amidase also involves nitrile hydrolysis [J].
Kobayashi, M ;
Goda, M ;
Shimizu, S .
FEBS LETTERS, 1998, 439 (03) :325-328
[10]   Identification of active sites in amidase: Evolutionary relationship between amide bond- and peptide bond-cleaving enzymes [J].
Kobayashi, M ;
Fujiwara, Y ;
Goda, M ;
Komeda, H ;
Shimizu, S .
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1997, 94 (22) :11986-11991