Why is the compact state of DNA preferred at higher temperature? Folding transition of a single DNA chain in the presence of a multivalent cation

被引:21
作者
Saito, T [1 ]
Iwaki, T [1 ]
Yoshikawa, K [1 ]
机构
[1] Kyoto Univ, Grad Sch Sci, Dept Phys, Kyoto 6068502, Japan
来源
EUROPHYSICS LETTERS | 2005年 / 71卷 / 02期
关键词
D O I
10.1209/epl/i2004-10541-6
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Upon the addition of multivalent cations, a giant DNA chain exhibits a large discrete transition from an elongated coil into a folded compact state. We performed single-chain observation of long DNAs in the presence of a tetravalent cation ( spermine), at various temperatures and monovalent salt concentrations. We confirmed that the compact state is preferred at higher temperatures and at lower monovalent salt concentrations. This result is interpreted in terms of an increase in the net translational entropy of small ions due to ionic exchange between higher and lower valence ions.
引用
收藏
页码:304 / 310
页数:7
相关论文
共 30 条
[21]   Bundle binding in polyelectrolyte solutions [J].
Stevens, MJ .
PHYSICAL REVIEW LETTERS, 1999, 82 (01) :101-104
[22]   COIL-GLOBULE PHASE-TRANSITION IN A SINGLE POLYSTYRENE CHAIN IN CYCLOHEXANE [J].
SWISLOW, G ;
SUN, ST ;
NISHIO, I ;
TANAKA, T .
PHYSICAL REVIEW LETTERS, 1980, 44 (12) :796-798
[23]   Giant charge inversion of a macroion due to multivalent counterions and monovalent coions: Molecular dynamics study [J].
Tanaka, M ;
Grosberg, AY .
JOURNAL OF CHEMICAL PHYSICS, 2001, 115 (01) :567-574
[24]   COLLAPSE OF SINGLE DNA MOLECULE IN POLY(ETHYLENE GLYCOL) SOLUTIONS [J].
VASILEVSKAYA, VV ;
KHOKHLOV, AR ;
MATSUZAWA, Y ;
YOSHIKAWA, K .
JOURNAL OF CHEMICAL PHYSICS, 1995, 102 (16) :6595-6602
[25]   CATION-INDUCED TOROIDAL CONDENSATION OF DNA STUDIES WITH CO3+(NH3)6 [J].
WIDOM, J ;
BALDWIN, RL .
JOURNAL OF MOLECULAR BIOLOGY, 1980, 144 (04) :431-453
[26]   COUNTER-ION-INDUCED CONDENSATION OF DEOXYRIBONUCLEIC-ACID - LIGHT-SCATTERING STUDY [J].
WILSON, RW ;
BLOOMFIELD, VA .
BIOCHEMISTRY, 1979, 18 (11) :2192-2196
[27]   Disappearance of the negative charge in giant DNA with a folding transition [J].
Yamasaki, Y ;
Teramoto, Y ;
Yoshikawa, K .
BIOPHYSICAL JOURNAL, 2001, 80 (06) :2823-2832
[28]   DISCRETE PHASE-TRANSITION OF GIANT DNA DYNAMICS OF GLOBULE FORMATION FROM A SINGLE MOLECULAR CHAIN [J].
YOSHIKAWA, K ;
MATSUZAWA, Y .
PHYSICA D, 1995, 84 (1-2) :220-227
[29]   Large discrete transition in a single DNA molecule appears continuous in the ensemble [J].
Yoshikawa, K ;
Takahashi, M ;
Vasilevskaya, VV ;
Khokhlov, AR .
PHYSICAL REVIEW LETTERS, 1996, 76 (16) :3029-3031
[30]   Multiscaling in a long semiflexible polymer chain in two dimensions [J].
Yoshinaga, N ;
Yoshikawa, K ;
Kidoaki, S .
JOURNAL OF CHEMICAL PHYSICS, 2002, 116 (22) :9926-9929