Open chromatin in pluripotency and reprogramming

被引:428
作者
Gaspar-Maia, Alexandre [2 ,3 ,4 ]
Alajem, Adi [1 ]
Meshorer, Eran [1 ]
Ramalho-Santos, Miguel [2 ,3 ,4 ]
机构
[1] Hebrew Univ Jerusalem, Inst Life Sci, Dept Genet, IL-91904 Jerusalem, Israel
[2] Univ Calif San Francisco, Dept Ob Gyn, Eli & Edythe Broad Ctr Regenerat Med & Stem Cell, Ctr Reprod Sci, San Francisco, CA 94143 USA
[3] Univ Calif San Francisco, Dept Pathol, Eli & Edythe Broad Ctr Regenerat Med & Stem Cell, Ctr Reprod Sci, San Francisco, CA 94143 USA
[4] Univ Calif San Francisco, Ctr Diabet, San Francisco, CA 94143 USA
基金
美国国家卫生研究院; 以色列科学基金会;
关键词
EMBRYONIC STEM-CELLS; PRIMORDIAL GERM-CELLS; HISTONE VARIANT H3.3; SELF-RENEWAL; REMODELING COMPLEX; DNA METHYLATION; DEVELOPMENTAL REGULATORS; EPIGENETIC MEMORY; HUMAN FIBROBLASTS; GENE REPRESSION;
D O I
10.1038/nrm3036
中图分类号
Q2 [细胞生物学];
学科分类号
071009 ; 090102 ;
摘要
Pluripotent stem cells can be derived from embryos or induced from adult cells by reprogramming. They are unique among stem cells in that they can give rise to all cell types of the body. Recent findings indicate that a particularly 'open' chromatin state contributes to maintenance of pluripotency. Two principles are emerging: specific factors maintain a globally open chromatin state that is accessible for transcriptional activation; and other chromatin regulators contribute locally to the silencing of lineage-specific genes until differentiation is triggered. These same principles may apply during reacquisition of an open chromatin state upon reprogramming to pluripotency, and during de-differentiation in cancer.
引用
收藏
页码:36 / 47
页数:12
相关论文
共 142 条
[1]   Global Chromatin Architecture Reflects Pluripotency and Lineage Commitment in the Early Mouse Embryo [J].
Ahmed, Kashif ;
Dehghani, Hesam ;
Rugg-Gunn, Peter ;
Fussner, Eden ;
Rossant, Janet ;
Bazett-Jones, David P. .
PLOS ONE, 2010, 5 (05)
[2]   Gli and hedgehog in cancer:: Tumours, embryos and stem cells [J].
Altaba, AR ;
Sánchez, P ;
Dahmane, N .
NATURE REVIEWS CANCER, 2002, 2 (05) :361-372
[3]   Heritable gene silencing in lymphocytes delays chromatid resolution without affecting the timing of DNA replication [J].
Azuara, V ;
Brown, KE ;
Williams, RRE ;
Webb, N ;
Dillon, N ;
Festenstein, R ;
Buckle, V ;
Merkenschlager, M ;
Fisher, AG .
NATURE CELL BIOLOGY, 2003, 5 (07) :668-U49
[4]   CHD7 cooperates with PBAF to control multipotent neural crest formation [J].
Bajpai, Ruchi ;
Chen, Denise A. ;
Rada-Iglesias, Alvaro ;
Zhang, Junmei ;
Xiong, Yiqin ;
Helms, Jill ;
Chang, Ching-Pin ;
Zhao, Yingming ;
Swigut, Tomek ;
Wysocka, Joanna .
NATURE, 2010, 463 (7283) :958-U135
[5]   An embryonic stem cell-like gene expression signature in poorly differentiated aggressive human tumors [J].
Ben-Porath, Ittai ;
Thomson, Matthew W. ;
Carey, Vincent J. ;
Ge, Ruping ;
Bell, George W. ;
Regev, Aviv ;
Weinberg, Robert A. .
NATURE GENETICS, 2008, 40 (05) :499-507
[6]   A bivalent chromatin structure marks key developmental genes in embryonic stem cells [J].
Bernstein, BE ;
Mikkelsen, TS ;
Xie, XH ;
Kamal, M ;
Huebert, DJ ;
Cuff, J ;
Fry, B ;
Meissner, A ;
Wernig, M ;
Plath, K ;
Jaenisch, R ;
Wagschal, A ;
Feil, R ;
Schreiber, SL ;
Lander, ES .
CELL, 2006, 125 (02) :315-326
[7]   Spatio-Temporal Plasticity in Chromatin Organization in Mouse Cell Differentiation and during Drosophila Embryogenesis [J].
Bhattacharya, Dipanjan ;
Talwar, Shefali ;
Mazumder, Aprotim ;
Shivashankar, G. V. .
BIOPHYSICAL JOURNAL, 2009, 96 (09) :3832-3839
[8]   Opinion - The origin of the cancer stem cell: current controversies and new insights [J].
Bjerkvig, R ;
Tysnes, BB ;
Aboody, KS ;
Najbauer, J ;
Terzis, AJA .
NATURE REVIEWS CANCER, 2005, 5 (11) :899-904
[9]   Polycomb complexes repress developmental regulators in murine embryonic stem cells [J].
Boyer, LA ;
Plath, K ;
Zeitlinger, J ;
Brambrink, T ;
Medeiros, LA ;
Lee, TI ;
Levine, SS ;
Wernig, M ;
Tajonar, A ;
Ray, MK ;
Bell, GW ;
Otte, AP ;
Vidal, M ;
Gifford, DK ;
Young, RA ;
Jaenisch, R .
NATURE, 2006, 441 (7091) :349-353
[10]   Core transcriptional regulatory circuitry in human embryonic stem cells [J].
Boyer, LA ;
Lee, TI ;
Cole, MF ;
Johnstone, SE ;
Levine, SS ;
Zucker, JR ;
Guenther, MG ;
Kumar, RM ;
Murray, HL ;
Jenner, RG ;
Gifford, DK ;
Melton, DA ;
Jaenisch, R ;
Young, RA .
CELL, 2005, 122 (06) :947-956