The complete chloroplast genome of the endangered species Cephalotaxus hainanensis (Cephalotaxaceae)

被引:0
|
作者
Chen, Shujun [1 ,2 ,3 ]
Zhang, Shuoxin [1 ,2 ]
Huang, Jian [1 ]
机构
[1] Northwest A&F Univ, Coll Forestry, Yangling, Shaanxi, Peoples R China
[2] Qinling Natl Forest Ecosyst Res Stn, Ningshan, Peoples R China
[3] Key Comprehens Lab Forestry, Yangling, Shaanxi, Peoples R China
来源
MITOCHONDRIAL DNA PART B-RESOURCES | 2018年 / 3卷 / 02期
关键词
Cephalotaxus hainanensis; Illumina sequencing; chloroplast genome; phylogenetic analysis;
D O I
10.1080/23802359.2018.1532838
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Cephalotaxus hainanensis is an endangered tree endemic to China with high medicinal values. In this study, the complete chloroplast genome of C. hainanensis was de novo assembled using Illumina high-throughput sequencing technology. The whole chloroplast genome was 136,877bp long with an asymmetric base composition (32.6% A, 17.6% C, 17.4% G and 32.4% T). The genome annotation predicted a total of 114 genes, including 82 protein-coding genes, 28 tRNA genes, and four rRNA genes. The neighbour-joining phylogenetic analysis based on 41 complete chloroplast genome sequences showed that C. hainanensis was more closely related to the congeneric C. sinensis. The assembled chloroplast genome of C. hainanensis will provide useful genomic data both for the phylogenetic research of Cephalotaxus and the conservation of this endangered species.
引用
收藏
页码:1280 / 1281
页数:2
相关论文
共 50 条
  • [41] The complete chloroplast genome sequence of Pellacalyx yunnanensis: an endangered species in China
    Zhang, Jinfeng
    Li, Yunqing
    Yuan, Xiaolong
    Wang, Yi
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (02): : 3948 - 3949
  • [42] Characterization of the complete chloroplast genome of the endangered species Carya sinensis (Juglandaceae)
    Hu, Yiheng
    Chen, Xi
    Feng, Xiaojia
    Woeste, Keith E.
    Zhao, Peng
    CONSERVATION GENETICS RESOURCES, 2016, 8 (04) : 467 - 470
  • [43] The complete chloroplast genome sequence of the endangered species Syringa pinnatifolia (Oleaceae)
    Zhang, Jingwen
    Jiang, Zaimin
    Su, Hao
    Zhao, Han
    Cai, Jing
    NORDIC JOURNAL OF BOTANY, 2019, 37 (05)
  • [44] The complete chloroplast genome of Malania oleifera (Olacaceae), an endangered species in China
    Yang, Yang
    He, Shui-Lian
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1867 - 1868
  • [45] Characterization of the complete chloroplast genome of Firmiana hainanensis (Malvaceae), an endemic and vulnerable tree species of China
    Tan, Fengxiao
    Banerjee, Achyut Kumar
    Deng, Jie
    Feng, Hui
    Feng, Yuanjiao
    Shu, Yinghua
    Wang, Jianwu
    MITOCHONDRIAL DNA PART B-RESOURCES, 2023, 8 (01): : 57 - 60
  • [46] Characterization of the complete chloroplast genome of Cephalotaxus sinensis (Cupressales: Taxaceae), an endangered Tertiary relict tree endemic to China
    Duan, Ren-Yan
    Yang, Li-Min
    Wu, Gan-Lin
    CONSERVATION GENETICS RESOURCES, 2019, 11 (04) : 405 - 408
  • [47] Characterization of the complete chloroplast genome of Cephalotaxus sinensis (Cupressales: Taxaceae), an endangered Tertiary relict tree endemic to China
    Ren-Yan Duan
    Li-Min Yang
    Gan-Lin Wu
    Conservation Genetics Resources, 2019, 11 : 405 - 408
  • [48] The complete chloroplast genome of an endangered orchidPaphiopedilum spicerianum
    Ge, Li-Ping
    Tang, Lu
    Li, Lu
    Luo, Yan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (03): : 3612 - 3613
  • [49] The complete chloroplast genome sequence of Phyllagathi hainanensis (Melastomataceae) and phylogenetic analysis
    Weng, Ai-Fang
    Yuan, Lang-Xing
    Sun, Qing-Hui
    Wang, Hong-Xin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2021, 6 (12): : 3461 - 3462
  • [50] Complete chloroplast genome of an endangered tree species, Toona ciliata (Sapindales: Meliaceae)
    Xin, Gui-Liang
    Liu, Jia-qian
    Liu, Jia
    MITOCHONDRIAL DNA PART B-RESOURCES, 2018, 3 (02): : 663 - 664