The effect of hydrogen bonding on the nonadiabatic dynamics of a thymine-water cluster

被引:13
|
作者
Lischka, Hans [1 ]
Barbatti, Mario [2 ]
Siddique, Farhan [1 ]
Das, Anita [1 ]
Aquino, Adelia J. A. [1 ]
机构
[1] Tianjin Univ, Sch Pharmaceut Sci & Technol, Tianjin 300072, Peoples R China
[2] Aix Marseille Univ, CNRS, ICR, Marseille, France
关键词
Surface hopping; Radiationless decay; Decay mechanism; EXCITED-STATE; MOLECULAR-DYNAMICS; COUPLED-CLUSTER; CONICAL INTERSECTIONS; ELECTRONIC-STRUCTURE; INTERNAL-CONVERSION; PHOTOEXCITED DNA; DARK STATE; BASE-PAIRS; BASIS-SETS;
D O I
10.1016/j.chemphys.2018.07.050
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Surface hopping photodynamics simulations have been performed on a cluster of thymine interacting with six water molecules (T(H2O)(6)). The second-order algebraic diagrammatic construction method (ADC(2)) has been used for calculating the required electronic energies and excited state gradients. Comparison with the previously performed photodynamics for the isolated thymine (Molecules 21 (2016) 1603) shows a similar global behavior and the central role of the S-1(n pi*) minimum for further long-term dynamics. The main difference comes from the destabilization of the n pi* state by hydrogen bonding, which leads to a significantly enhanced conversion rate from the bright S-2(pi pi*) state to S-1(n pi*) for the T(H2O)(6) cluster. On the other hand, the decay time to S-0 and the trapping in S-1 is significantly increased. Due to the localized character of the lone pair orbital involved in the n pi* transition at one oxygen atom, specific changes in the structure of the hydrogen bonded network are observed. Since the hydrogen bonding of the water molecules connected to that oxygen atom is specifically weakened, they show dissociations from thymine during the photodynamics, starling within 30 fs after electronic excitation of thymine.
引用
收藏
页码:472 / 479
页数:8
相关论文
共 50 条
  • [1] Solvation structure and hydrogen bond dynamics of uracil-water and thymine-water: A comparison of different force fields of uracil and thymine
    Parida, Chinmay
    Chowdhuri, Snehasis
    CHEMICAL PHYSICS LETTERS, 2024, 846
  • [2] Specific Photodynamics in Thymine Clusters: The Role of Hydrogen Bonding
    Nosenko, Yevgeniy
    Kunitski, Maksim
    Brutschy, Bernhard
    JOURNAL OF PHYSICAL CHEMISTRY A, 2011, 115 (34) : 9429 - 9439
  • [3] Nonadiabatic dynamics simulation of photoisomerization mechanism of photoswitch azodicarboxamide: Hydrogen bonding effects
    Liu, Yan
    Luo, Jian
    JOURNAL OF PHOTOCHEMISTRY AND PHOTOBIOLOGY A-CHEMISTRY, 2018, 367 : 236 - 239
  • [4] Vibronic structure and predissociation dynamics of 2-methoxythiophenol (S1): The effect of intramolecular hydrogen bonding on nonadiabatic dynamics
    Lim, Jean Sun
    You, Hyun Sik
    Kim, So-Yeon
    Kim, Junggil
    Park, Young Choon
    Kim, Sang Kyu
    JOURNAL OF CHEMICAL PHYSICS, 2019, 151 (24)
  • [5] Mixed Quantum/Classical Method for Nonadiabatic Quantum Dynamics in Explicit Solvent Models: The ππ*/nπ* Decay of Thymine in Water as a Test Case
    Cerezo, Javier
    Liu, Yanli
    Lin, Na
    Zhao, Xian
    Improta, Roberto
    Santoro, Fabrizio
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2018, 14 (02) : 820 - 832
  • [6] Effect of the local hydrogen bonding network on the reorientational and translational dynamics in supercritical water
    Skarmoutsos, Ioannis
    Guardia, Elvira
    JOURNAL OF CHEMICAL PHYSICS, 2010, 132 (07)
  • [7] Effect of Water on Solvation Structure and Dynamics of Ions in the Peptide Bond Environment: Importance of Hydrogen Bonding and Dynamics of the Solvents
    Pattanayak, Subrat Kumar
    Chowdhuri, Snehasis
    JOURNAL OF PHYSICAL CHEMISTRY B, 2011, 115 (45) : 13241 - 13252
  • [8] Ion effect on the dynamics of water hydrogen bonding network: A theoretical and computational spectroscopy point of view
    Zhang, Qiang
    Pan, Zhijun
    Zhang, Lu
    Zhang, Ruiting
    Chen, Zhening
    Jin, Tan
    Wu, Tianmin
    Chen, Xian
    Zhuang, Wei
    WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE, 2018, 8 (06)
  • [9] Understanding the hydrogen bonding preferences and dynamics of prontosil in water and methanol
    Ashok, Gayathri
    Thomas, Francis
    Thomas, Renjith
    CHEMICAL PHYSICS IMPACT, 2024, 8
  • [10] A TDDFT/EFP1 study on hydrogen bonding dynamics of coumarin 151 in water
    Ramegowda, Mariyappa
    SPECTROCHIMICA ACTA PART A-MOLECULAR AND BIOMOLECULAR SPECTROSCOPY, 2015, 137 : 99 - 104