Shake-it-off: a simple ultrasonic cryo-EM specimen-preparation device

被引:50
作者
Rubinstein, John L. [1 ,2 ,3 ]
Guo, Hui [1 ,2 ]
Ripstein, Zev A. [1 ,3 ]
Haydaroglu, Ali [4 ]
Au, Aaron [5 ]
Yip, Christopher M. [3 ,5 ]
Di Trani, Justin M. [1 ]
Benlekbir, Samir [1 ]
Kwok, Timothy [1 ]
机构
[1] Hosp Sick Children Res Inst, Toronto, ON, Canada
[2] Univ Toronto, Dept Med Biophys, Toronto, ON, Canada
[3] Univ Toronto, Dept Biochem, Toronto, ON, Canada
[4] Univ Toronto, Engn Sci Div, Toronto, ON, Canada
[5] Univ Toronto, Inst Biomat & Biomed Engn, Toronto, ON, Canada
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2019年 / 75卷
基金
加拿大健康研究院;
关键词
cryo-EM; specimen preparation; ultrasonic; self-wicking grids; Raspberry Pi; 3D printing; CNC milling; CRYOELECTRON MICROSCOPY; VITRIFICATION SYSTEM; GRID PREPARATION; SPOTITON; SAMPLES;
D O I
10.1107/S2059798319014372
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Although microscopes and image-analysis software for electron cryomicroscopy (cryo-EM) have improved dramatically in recent years, specimen-preparation methods have lagged behind. Most strategies still rely on blotting microscope grids with paper to produce a thin film of solution suitable for vitrification. This approach loses more than 99.9% of the applied sample and requires several seconds, leading to problematic air-water interface interactions for macromolecules in the resulting thin film of solution and complicating time-resolved studies. Recently developed self-wicking EM grids allow the use of small volumes of sample, with nanowires on the grid bars removing excess solution to produce a thin film within tens of milliseconds from sample application to freezing. Here, a simple cryo-EM specimen-preparation device that uses components from an ultrasonic humidifier to transfer protein solution onto a self-wicking EM grid is presented. The device is controlled by a Raspberry Pi single-board computer and all components are either widely available or can be manufactured by online services, allowing the device to be constructed in laboratories that specialize in cryo-EM rather than instrument design. The simple open-source design permits the straightforward customization of the instrument for specialized experiments.
引用
收藏
页码:1063 / 1070
页数:8
相关论文
共 27 条
[1]   Blotting-free and lossless cryo-electron microscopy grid preparation from nanoliter-sized protein samples and single-cell extracts [J].
Arnold, Stefan A. ;
Albiez, Stefan ;
Bieri, Andrej ;
Syntychaki, Anastasia ;
Adaixo, Ricardo ;
McLeod, Robert A. ;
Goldie, Kenneth N. ;
Stahlberg, Henning ;
Braun, Thomas .
JOURNAL OF STRUCTURAL BIOLOGY, 2017, 197 (03) :220-226
[2]   Total Sample Conditioning and Preparation of Nanoliter Volumes for Electron Microscopy [J].
Arnold, Stefan A. ;
Albiez, Stefan ;
Opara, Nadia ;
Chami, Mohamed ;
Schmidli, Claudio ;
Bieri, Andrej ;
Padeste, Celestino ;
Stahlberg, Henning ;
Braun, Thomas .
ACS NANO, 2016, 10 (05) :4981-4988
[3]   Delivery of femtolitre droplets using surface acoustic wave based atomisation for cryo-EM grid preparation [J].
Ashtiani, Dariush ;
Venugopal, Hari ;
Belousoff, Matthew ;
Spicer, Bradley ;
Mak, Johnson ;
Neild, Adrian ;
de Marco, Alex .
JOURNAL OF STRUCTURAL BIOLOGY, 2018, 203 (02) :94-101
[4]   CONTROLLED ENVIRONMENT VITRIFICATION SYSTEM - AN IMPROVED SAMPLE PREPARATION TECHNIQUE [J].
BELLARE, JR ;
DAVIS, HT ;
SCRIVEN, LE ;
TALMON, Y .
JOURNAL OF ELECTRON MICROSCOPY TECHNIQUE, 1988, 10 (01) :87-111
[5]   Holey carbon micro-arrays for transmission electron microscopy: A microcontact printing approach [J].
Chester, David W. ;
Klemic, James F. ;
Stern, Eric ;
Sigworth, Fred J. ;
Klemic, Kathryn G. .
ULTRAMICROSCOPY, 2007, 107 (08) :685-691
[6]   Protein denaturation at the air-water interface and how to prevent it [J].
D'Imprima, Edoardo ;
Floris, Davide ;
Joppe, Mirko ;
Sanchez, Ricardo ;
Grininger, Martin ;
Kuehlbrandt, Werner .
ELIFE, 2019, 8
[7]   Spotiton: New features and applications [J].
Dandey, Venkata P. ;
Wei, Hui ;
Zhang, Zhening ;
Tan, Yong Zi ;
Acharya, Priyamvada ;
Eng, Edward T. ;
Rice, William J. ;
Kahn, Peter A. ;
Potter, Clinton S. ;
Carragher, Bridget .
JOURNAL OF STRUCTURAL BIOLOGY, 2018, 202 (02) :161-169
[8]   CRYO-ELECTRON MICROSCOPY OF VITRIFIED SPECIMENS [J].
DUBOCHET, J ;
ADRIAN, M ;
CHANG, JJ ;
HOMO, JC ;
LEPAULT, J ;
MCDOWALL, AW ;
SCHULTZ, P .
QUARTERLY REVIEWS OF BIOPHYSICS, 1988, 21 (02) :129-228
[9]   A Fast and Effective Microfluidic Spraying-Plunging Method for High-Resolution Single-Particle Cryo-EM [J].
Feng, Xiangsong ;
Fu, Ziao ;
Kaledhonkar, Sandip ;
Jia, Yuan ;
Shah, Binita ;
Jin, Amy ;
Liu, Zheng ;
Sun, Ming ;
Chen, Bo ;
Grassucci, Robert A. ;
Ren, Yukun ;
Jiang, Hongyuan ;
Frank, Joachim ;
Lin, Qiao .
STRUCTURE, 2017, 25 (04) :663-+
[10]   Factors that Influence the Formation and Stability of Thin, Cryo-EM Specimens [J].
Glaeser, Robert M. ;
Han, Bong-Gyoon ;
Csencsits, Roseann ;
Killilea, Alison ;
Pulk, Arto ;
Cate, Jamie H. D. .
BIOPHYSICAL JOURNAL, 2016, 110 (04) :749-755