Dynamical roles of biological regulatory circuits

被引:76
作者
Thieffry, Denis
机构
[1] TAGC, INSERM, ERM 206, F-13288 Marseille 09, France
[2] Univ Mediterranee, F-13288 Marseille 09, France
关键词
regulatory circuits; multistability; homeostasis; oscillations; synthetic biology; systems biology; dynamics;
D O I
10.1093/bib/bbm028
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Regulatory circuits are found at the basis of all non-trivial dynamical properties of biological networks. More specifically, positive circuits are involved in the generation of multiple differentiated states, whereas negative circuits can generate cyclic or homeostatic behaviours. These notions are briefly reviewed, from initial biological formulations to mathematical formalisations, further encompassing their application to the design of synthetic regulatory systems. Finally, current challenges for the analysis of increasingly complex regulatory networks are indicated, as well as prospects for our understanding of development and evolution.
引用
收藏
页码:220 / 225
页数:6
相关论文
共 30 条
  • [1] Engineering stability in gene networks by autoregulation
    Becskei, A
    Serrano, L
    [J]. NATURE, 2000, 405 (6786) : 590 - 593
  • [2] Positive feedback in eukaryotic gene networks:: cell differentiation by graded to binary response conversion
    Becskei, A
    Séraphin, B
    Serrano, L
    [J]. EMBO JOURNAL, 2001, 20 (10) : 2528 - 2535
  • [3] High-dimensional switches and the modelling of cellular differentiation
    Cinquin, O
    Demongeot, J
    [J]. JOURNAL OF THEORETICAL BIOLOGY, 2005, 233 (03) : 391 - 411
  • [4] Analysis of a generic model of eukaryotic cell-cycle regulation
    Csikasz-Nagy, Attila
    Battogtokh, Dorjsuren
    Chen, Katherine C.
    Novak, Bela
    Tyson, John J.
    [J]. BIOPHYSICAL JOURNAL, 2006, 90 (12) : 4361 - 4379
  • [5] Strategies for dealing with incomplete information in the modeling of molecular interaction networks
    de Jong, Hidde
    Ropers, Delphine
    [J]. BRIEFINGS IN BIOINFORMATICS, 2006, 7 (04) : 354 - 363
  • [6] Eisenfeld J., 1985, Mathematics and computers in biomedical applications, P39
  • [7] A synthetic oscillatory network of transcriptional regulators
    Elowitz, MB
    Leibler, S
    [J]. NATURE, 2000, 403 (6767) : 335 - 338
  • [8] Construction of a genetic toggle switch in Escherichia coli
    Gardner, TS
    Cantor, CR
    Collins, JJ
    [J]. NATURE, 2000, 403 (6767) : 339 - 342
  • [9] AUTOGENOUS REGULATION OF GENE-EXPRESSION
    GOLDBERGER, RF
    [J]. SCIENCE, 1974, 183 (4127) : 810 - 816
  • [10] Computational approaches to cellular rhythms
    Goldbeter, A
    [J]. NATURE, 2002, 420 (6912) : 238 - 245