Evidence for the butyrate metabolism as key pathway improving ulcerative colitis in both pediatric and adult patients

被引:16
作者
Zhou, Zheng [1 ]
Cao, Jiasheng [2 ]
Liu, Xiaoming [1 ]
Li, Mingsong [1 ,3 ]
机构
[1] Southern Med Univ, Nanfang Hosp, Dept Gastroenterol, Guangdong Prov Key Lab Gastroenterol, 1838 North Guangzhou Ave, Guangzhou 510515, Guangdong, Peoples R China
[2] Zhejiang Univ, Sir Run Run Shaw Hosp, Dept Gen Surg, Sch Med, Hangzhou 310016, Zhejiang, Peoples R China
[3] Guangzhou Med Univ, Dept Gastroenterol, Affiliated Hosp 3, Guangzhou 510000, Guangdong, Peoples R China
基金
中国国家自然科学基金;
关键词
Butyrate; ulcerative colitis; pediatric; adult; bioinformatic; INFLAMMATORY-BOWEL-DISEASE; INTESTINAL MICROBIOTA; ASSOCIATION; EXPRESSION;
D O I
10.1080/21655979.2021.1985815
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Accumulating evidence has shown many similarities and differences of gene profiles and pathways between pediatric and adult ulcerative colitis (UC) patients. In this study, we aimed to investigate the shared genes and pathways in intestinal tissues of pediatric and adult UC. Differentially expressed genes (DEGs) between pediatric and adult UC were identified via bioinformatic analysis of Gene Expression Omnibus datasets GSE87473 and GSE126124. Gene Ontology and pathway enrichment were used to analyze overlapped and distinguished DEGs. Gene Set Variation Analysis (GSVA) was utilized for contrast consistency. Mice colitis models were induced by dextran sulfate sodium (DSS) and Citrobacter rodentium. 2616 DEGs were screened out in intestinal tissues of adult UC compared with those of adult healthy controls, and 1195 DEGs in pediatrics. Same pathways between pediatric and adult UC were enriched using overlapped DEGs, mainly related to immune responses and metabolic processes, including butyrate metabolism, which was also identified by GSVA analysis. Of note, butyrate metabolism was the exclusive down-regulated pathway enriched by these two analyses, indicating that butyrate metabolism is one of the key pathways associated with both pediatric and adult UC. In addition, butyrate suppressed DSS-induced and Citrobacter rodentium-induced intestinal inflammation in mice. Therefore, the study revealed that butyrate metabolism was critical in both pediatric and adult UC. And butyrate suppressed colitis in mice, which provided a theoretical basis for the potential treatment of butyrate for UC patients.
引用
收藏
页码:8309 / 8324
页数:16
相关论文
共 53 条
  • [1] Environmental risk factors for inflammatory bowel diseases: Evidence based literature review
    Abegunde, Ayokunle T.
    Muhammad, Bashir H.
    Bhatti, Owais
    Ali, Tauseef
    [J]. WORLD JOURNAL OF GASTROENTEROLOGY, 2016, 22 (27) : 6296 - 6317
  • [2] The global, regional, and national burden of inflammatory bowel disease in 195 countries and territories, 1990-2017: a systematic analysis for the Global Burden of Disease Study 2017
    Alatab, Sudabeh
    Sepanlou, Sadaf G.
    Ikuta, Kevin
    Vahedi, Homayoon
    Bisignano, Catherine
    Safiri, Saeid
    Sadeghi, Anahita
    Nixon, Molly R.
    Abdoli, Amir
    Abolhassani, Hassan
    Alipour, Vahid
    Almadi, Majid A. H.
    Almasi-Hashiani, Amir
    Anushiravani, Amir
    Arabloo, Jalal
    Atique, Suleman
    Awasthi, Ashish
    Badawi, Alaa
    Baig, Atif A. A.
    Bhala, Neeraj
    Bijani, Ali
    Biondi, Antonio
    Borzi, Antonio M.
    Burke, Kristin E.
    Carvalho, Felix
    Daryani, Ahmad
    Dubey, Manisha
    Eftekhari, Aziz
    Fernandes, Eduarda
    Fernandes, Joao C.
    Fischer, Florian
    Haj-Mirzaian, Arvin
    Haj-Mirzaian, Arya
    Hasanzadeh, Amir
    Hashemian, Maryam
    Hay, Simon, I
    Hoang, Chi L.
    Househ, Mowafa
    Ilesanmi, Olayinka S.
    Balalami, Nader Jafari
    James, Spencer L.
    Kengne, Andre P.
    Malekzadeh, Masoud M.
    Merat, Shahin
    Meretoja, Tuomo J.
    Mestrovic, Tomislav
    Mirrakhimov, Erkin M.
    Mirzaei, Hamed
    Mohammad, Karzan A.
    Mokdad, Ali H.
    [J]. LANCET GASTROENTEROLOGY & HEPATOLOGY, 2020, 5 (01): : 17 - 30
  • [3] Assisi R F, 2008, Minerva Gastroenterol Dietol, V54, P231
  • [4] NCBI GEO: archive for functional genomics data sets-update
    Barrett, Tanya
    Wilhite, Stephen E.
    Ledoux, Pierre
    Evangelista, Carlos
    Kim, Irene F.
    Tomashevsky, Maxim
    Marshall, Kimberly A.
    Phillippy, Katherine H.
    Sherman, Patti M.
    Holko, Michelle
    Yefanov, Andrey
    Lee, Hyeseung
    Zhang, Naigong
    Robertson, Cynthia L.
    Serova, Nadezhda
    Davis, Sean
    Soboleva, Alexandra
    [J]. NUCLEIC ACIDS RESEARCH, 2013, 41 (D1) : D991 - D995
  • [5] Targeted sequencing-based analyses of candidate gene variants in ulcerative colitis-associated colorectal neoplasia
    Chakrabarty, Sanjiban
    Varghese, Vinay Koshy
    Sahu, Pranoy
    Jayaram, Pradyumna
    Shivakumar, Bhadravathi M.
    Pai, Cannanore Ganesh
    Satyamoorthy, Kapaettu
    [J]. BRITISH JOURNAL OF CANCER, 2017, 117 (01) : 136 - 143
  • [6] Role of Diet in the Development of Inflammatory Bowel Disease
    Chapman-Kiddell, Christine A.
    Davies, Peter S. W.
    Gillen, Lynda
    Radford-Smith, Graham L.
    [J]. INFLAMMATORY BOWEL DISEASES, 2010, 16 (01) : 137 - 151
  • [7] Family history of inflammatory bowel disease among patients with ulcerative colitis: A systematic review and meta-analysis
    Childers, Ryan E.
    Eluri, Swathi
    Vazquez, Christine
    Weise, Rayna Matsuno
    Bayless, Theodore M.
    Hutfless, Susan
    [J]. JOURNAL OF CROHNS & COLITIS, 2014, 8 (11) : 1480 - 1497
  • [8] A COEFFICIENT OF AGREEMENT FOR NOMINAL SCALES
    COHEN, J
    [J]. EDUCATIONAL AND PSYCHOLOGICAL MEASUREMENT, 1960, 20 (01) : 37 - 46
  • [9] Conserved transcriptomic profile between mouse and human colitis allows unsupervised patient stratification
    Czarnewski, Paulo
    Parigi, Sara M.
    Sorini, Chiara
    Diaz, Oscar E.
    Das, Srustidhar
    Gagliani, Nicola
    Villablanca, Eduardo J.
    [J]. NATURE COMMUNICATIONS, 2019, 10 (1)
  • [10] Impaired butyrate oxidation in ulcerative colitis is due to decreased butyrate uptake and a defect in the oxidation pathway
    De Preter, Vicky
    Arijs, Ingrid
    Windey, Karen
    Vanhove, Wiebe
    Vermeire, Severine
    Schuit, Frans
    Rutgeerts, Paul
    Verbeke, Kristin
    [J]. INFLAMMATORY BOWEL DISEASES, 2012, 18 (06) : 1127 - 1136