Circadian Entrainment Triggers Maturation of Human In Vitro Islets

被引:108
作者
Alvarez-Dominguez, Juan R. [1 ]
Donaghey, Julie [1 ]
Rasouli, Niloofar [1 ]
Kenty, Jennifer H. R. [1 ]
Helman, Aharon [1 ]
Charlton, Jocelyn [1 ,2 ]
Straubhaar, Juerg R. [1 ]
Meissner, Alexander [1 ,2 ]
Melton, Douglas A. [1 ]
机构
[1] Harvard Univ, Harvard Stem Cell Inst, Dept Stem Cell & Regenerat Biol, Cambridge, MA 02138 USA
[2] Max Planck Inst Mol Genet, Dept Genome Regulat, D-14195 Berlin, Germany
关键词
PIONEER TRANSCRIPTION FACTORS; BETA-CELL MATURATION; OPEN CHROMATIN; DE-NOVO; GENE; ENHANCERS; DYNAMICS; GENERATION; SPECIFICATION; EXPRESSION;
D O I
10.1016/j.stem.2019.11.011
中图分类号
Q813 [细胞工程];
学科分类号
摘要
Stem-cell-derived tissues could transform disease research and therapy, yet most methods generate functionally immature products. We investigate how human pluripotent stem cells (hPSCs) differentiate into pancreatic islets in vitro by profiling DNA methylation, chromatin accessibility, and histone modification changes. We find that enhancer potential is reset upon lineage commitment and show how pervasive epigenetic priming steers endocrine cell fates. Modeling islet differentiation and maturation regulatory circuits reveals genes critical for generating endocrine cells and identifies circadian control as limiting for in vitro islet function. Entrainment to circadian feeding/fasting cycles triggers islet metabolic maturation by inducing cyclic synthesis of energy metabolism and insulin secretion effectors, including antiphasic insulin and glucagon pulses. Following entrainment, hPSC-derived islets gain persistent chromatin changes and rhythmic insulin responses with a raised glucose threshold, a hallmark of functional maturity, and function within days of transplantation. Thus, hPSC-derived tissues are amenable to functional improvement by circadian modulation.
引用
收藏
页码:108 / +
页数:25
相关论文
共 100 条
[1]   Pioneer factors govern super-enhancer dynamics in stem cell plasticity and lineage choice [J].
Adam, Rene C. ;
Yang, Hanseul ;
Rockowitz, Shira ;
Larsen, Samantha B. ;
Nikolova, Maria ;
Oristian, Daniel S. ;
Polak, Lisa ;
Kadaja, Meelis ;
Asare, Amma ;
Zheng, Deyou ;
Fuchs, Elaine .
NATURE, 2015, 521 (7552) :366-+
[2]   Restructuring of Pancreatic Islets and Insulin Secretion in a Postnatal Critical Window [J].
Aguayo-Mazzucato, Cristina ;
Sanchez-Soto, Carmen ;
Godinez-Puig, Victoria ;
Gutierrez-Ospina, Gabriel ;
Hiriart, Marcia .
PLOS ONE, 2006, 1 (01)
[3]   The Super-Enhancer-Derived alncRNA-EC7/Bloodlinc Potentiates Red Blood Cell Development in trans [J].
Alvarez-Dominguez, Juan R. ;
Knoll, Marko ;
Gromatzky, Austin A. ;
Lodish, Harvey F. .
CELL REPORTS, 2017, 19 (12) :2503-2514
[4]   Widespread and dynamic translational control of red blood cell development [J].
Alvarez-Dominguez, Juan R. ;
Zhang, Xu ;
Hu, Wenqian .
BLOOD, 2017, 129 (05) :619-629
[5]   Efficient Generation of Glucose-Responsive Beta Cells from Isolated GP2+ Human Pancreatic Progenitors [J].
Ameri, Jacqueline ;
Borup, Rehannah ;
Prawiro, Christy ;
Ramond, Cyrille ;
Schachter, Karen A. ;
Scharfmann, Raphael ;
Semb, Henrik .
CELL REPORTS, 2017, 19 (01) :36-49
[6]   Differential expression analysis for sequence count data [J].
Anders, Simon ;
Huber, Wolfgang .
GENOME BIOLOGY, 2010, 11 (10)
[7]   HTSeq-a Python']Python framework to work with high-throughput sequencing data [J].
Anders, Simon ;
Pyl, Paul Theodor ;
Huber, Wolfgang .
BIOINFORMATICS, 2015, 31 (02) :166-169
[8]   Gene Ontology: tool for the unification of biology [J].
Ashburner, M ;
Ball, CA ;
Blake, JA ;
Botstein, D ;
Butler, H ;
Cherry, JM ;
Davis, AP ;
Dolinski, K ;
Dwight, SS ;
Eppig, JT ;
Harris, MA ;
Hill, DP ;
Issel-Tarver, L ;
Kasarskis, A ;
Lewis, S ;
Matese, JC ;
Richardson, JE ;
Ringwald, M ;
Rubin, GM ;
Sherlock, G .
NATURE GENETICS, 2000, 25 (01) :25-29
[9]   Circadian Integration of Metabolism and Energetics [J].
Bass, Joseph ;
Takahashi, Joseph S. .
SCIENCE, 2010, 330 (6009) :1349-1354
[10]  
Bastian M., 2009, P 3 INT C WEBL SOC M