Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: Insights into DNA sequence discrimination by ETS proteins

被引:96
作者
Mo, Y
Vaessen, B
Johnston, K
Marmorstein, R [1 ]
机构
[1] Univ Penn, Wistar Inst, Philadelphia, PA 19104 USA
[2] Univ Penn, Dept Chem, Philadelphia, PA 19104 USA
基金
美国国家卫生研究院;
关键词
D O I
10.1016/S1097-2765(00)80130-6
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
SAP-1 is a member of the Ets transcription factors and cooperates with SRF protein to activate transcription of the c-fos protooncogene. The crystal structures of the conserved ETS domain of SAP-1 bound to DNA sequences from the E74 and c-fos promoters reveal that a set of conserved residues contact a GGA core DNA sequence. Discrimination for sequences outside this core is mediated by DNA contacts from conserved and nonconserved protein residues and sequence-dependent DNA structural properties characteristic of A-form DNA structure. Comparison with the related PU.1/DNA and GABP alpha/beta/DNA complexes provides general insights into DNA discrimination between Ets proteins. Modeling studies of a SAP-1/SRF/DNA complex suggest that SRF may modulate SAP-1 binding to DNA by interacting with its ETS domain.
引用
收藏
页码:201 / 212
页数:12
相关论文
共 69 条
[1]  
AGGARWAL A K, 1990, Methods (Orlando), V1, P83, DOI 10.1016/S1046-2023(05)80150-1
[2]  
Bassuk AG, 1997, ADV IMMUNOL, V64, P65, DOI 10.1016/S0065-2776(08)60887-1
[3]   The structure of GABPα/β:: An ETS domain ankyrin repeat heterodimer bound to DNA [J].
Batchelor, AH ;
Piper, DE ;
de la Brousse, FC ;
McKnight, SL ;
Wolberger, C .
SCIENCE, 1998, 279 (5353) :1037-1041
[4]   THE NUCLEIC-ACID DATABASE - A COMPREHENSIVE RELATIONAL DATABASE OF 3-DIMENSIONAL STRUCTURES OF NUCLEIC-ACIDS [J].
BERMAN, HM ;
OLSON, WK ;
BEVERIDGE, DL ;
WESTBROOK, J ;
GELBIN, A ;
DEMENY, T ;
HSIEH, SH ;
SRINIVASAN, AR ;
SCHNEIDER, B .
BIOPHYSICAL JOURNAL, 1992, 63 (03) :751-759
[5]   THE WINGED-HELIX DNA-BINDING MOTIF - ANOTHER HELIX-TURN-HELIX TAKEOFF [J].
BRENNAN, RG .
CELL, 1993, 74 (05) :773-776
[6]  
BROWN LA, 1998, IN PRESS ONCOGENE
[7]   SPECIFICITIES OF PROTEIN PROTEIN AND PROTEIN DNA INTERACTION OF GABP-ALPHA AND 2 NEWLY DEFINED ETS-RELATED PROTEINS [J].
BROWN, TA ;
MCKNIGHT, SL .
GENES & DEVELOPMENT, 1992, 6 (12B) :2502-2512
[8]  
Brunger A. T, 1992, X PLOR 3 1 SYSTEM XR
[9]   FREE R-VALUE - A NOVEL STATISTICAL QUANTITY FOR ASSESSING THE ACCURACY OF CRYSTAL-STRUCTURES [J].
BRUNGER, AT .
NATURE, 1992, 355 (6359) :472-475
[10]   SLOW-COOLING PROTOCOLS FOR CRYSTALLOGRAPHIC REFINEMENT BY SIMULATED ANNEALING [J].
BRUNGER, AT ;
KRUKOWSKI, A ;
ERICKSON, JW .
ACTA CRYSTALLOGRAPHICA SECTION A, 1990, 46 :585-593