Conformational and Structural Characterization of Carbohydrates and their Interactions Studied by NMR

被引:6
|
作者
Javier Canada, Francisco [1 ,3 ]
Canales, Angeles [2 ]
Valverde, Pablo [1 ]
Fernandez de Toro, Beatriz [1 ]
Martinez-Orts, Monica [2 ]
Oquist Phillips, Paola [1 ]
Pereda, Amaia [1 ]
机构
[1] CSIC, Ctr Invest Biol Margarita Salas, Struct & Chem Biol Dept, Madrid 28029, Spain
[2] Univ Complutense Madrid, Fac Ciencias Quim, Dept Quim Organ 1, Avd Complutense S-N, Madrid 28040, Spain
[3] Ctr Invest Biomed Red Enfermedades Resp CIBERES, Ave Monforte de Lemos 3-5, Madrid 28029, Spain
关键词
Carbohydrates; glycans; NMR; structure; conformational analysis; molecular recognition; RESIDUAL DIPOLAR COUPLINGS; NEISSERIA-MENINGITIDIS SEROGROUP; SOLID-STATE NMR; LIGAND-BINDING; MOLECULAR RECOGNITION; PROTEIN INTERACTIONS; ENHANCED NMR; N-GLYCANS; DC-SIGN; SPECTROSCOPY;
D O I
10.2174/0929867328666210705154046
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Carbohydrates, either free or as glycans conjugated with other biomolecules, participate in a plethora of essential biological processes. Their apparent simplicity in terms of chemical functionality hides an extraordinary diversity and structural complexity. Deeply deciphering at the atomic level their structures is essential to understand their biological function and activities, but it is still a challenging task in need of complementary approaches and no generalized procedures are available to address the study of such complex, natural glycans. The versatility of Nuclear Magnetic Resonance spectroscopy (NMR) often makes it the preferred choice to study glycans and carbohydrates in solution media. The most basic NMR parameters, namely chemical shifts, coupling constants, and nuclear Overhauser effects, allow defining short or repetitive chain sequences and characterize their structures and local geometries either in the free state or when interacting with other biomolecules, rendering additional information on the molecular recognition processes. The increased accessibility to carbohydrate molecules extensively or selectively labeled with 13C is boosting the resolution and detail which analyzed glycan structures can reach. In turn, structural information derived from NMR complemented with molecular modeling and theoretical calculations can also provide dynamic information on the conformational flexibility of carbohydrate structures. Furthermore, using partially oriented media or paramagnetic perturbations, it has been possible to introduce additional longrange observables rendering structural information on longer and branched glycan chains. In this review, we provide examples of these studies and an overview of the recent and most relevant NMR applications in the glycobiology field.
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页码:1147 / 1172
页数:26
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