Structure of indole-3-glycerol phosphate synthase from Thermus thermophilus HB8: implications for thermal stability

被引:14
作者
Bagautdinov, Bagautdin [1 ,2 ]
Yutani, Katsuhide [2 ]
机构
[1] Japan Synchrotron Radiat Res Inst JASRI SPring 8, Sayo, Hyogo 6795148, Japan
[2] RIKEN SPring 8 Ctr, Harima Inst, Sayo, Hyogo 6795148, Japan
来源
ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY | 2011年 / 67卷
关键词
SULFOLOBUS-SOLFATARICUS; CRYSTAL-STRUCTURE; HYDROGEN-BONDS; CONFORMATIONAL STABILITY; 3-DIMENSIONAL STRUCTURE; STABILIZATION CENTERS; PROTEIN FLEXIBILITY; PYROCOCCUS-FURIOSUS; THERMOTOGA-MARITIMA; SECONDARY STRUCTURE;
D O I
10.1107/S0907444911045264
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The three-dimensional structure of indole-3-glycerol phosphate synthase (IGPS) from the thermophilic bacterium Thermus thermophilus HB8 (TtIGPS) has been determined at 1.8 angstrom resolution. The structure adopts a typical (beta/alpha)(8)-barrel fold with an additional N-terminal extension of 46 residues. A detailed comparison of the crystal structure of TtIGPS with available structures of IGPS from the archaeon Sulfolobus solfataricus (SsIGPS) and the bacteria Thermotoga maritima (TmIGPS) and Escherichia coli (EcIGPS) has been performed. Although the overall folds of the proteins are the same, there are differences in amino-acid composition, structural rigidity, ionic features and stability clusters which may account for the high thermostability of the hyperthermophilic (SsIGPS and TmIGPS) and thermophilic (TtIGPS) proteins when compared with the mesophilic EcIGPS. The thermostability of IGPS seems to be established mainly by favourable interactions of charged residues, salt bridges and the spatial distribution of relatively rigid clusters of extensively interacting residues.
引用
收藏
页码:1054 / 1064
页数:11
相关论文
共 76 条
  • [1] INDOLE-3-GLYCEROL-PHOSPHATE SYNTHASE FROM SULFOLOBUS-SOLFATARICUS AS A MODEL FOR STUDYING THERMOSTABLE TIM-BARREL ENZYMES
    ANDREOTTI, G
    TUTINO, ML
    SANNIA, G
    MARINO, G
    CUBELLIS, MV
    [J]. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEIN STRUCTURE AND MOLECULAR ENZYMOLOGY, 1994, 1208 (02): : 310 - 315
  • [2] Stability of a thermophilic TIM-barrel enzyme: Indole-3-glycerol phosphate synthase from the thermophilic archaeon Sulfolobus solfataricus
    Andreotti, G
    Cubellis, MV
    DiPalo, M
    Fessas, D
    Sannia, G
    Marino, G
    [J]. BIOCHEMICAL JOURNAL, 1997, 323 : 259 - 264
  • [3] Electrostatics of nanosystems: Application to microtubules and the ribosome
    Baker, NA
    Sept, D
    Joseph, S
    Holst, MJ
    McCammon, JA
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2001, 98 (18) : 10037 - 10041
  • [4] ION-PAIRS IN PROTEINS
    BARLOW, DJ
    THORNTON, JM
    [J]. JOURNAL OF MOLECULAR BIOLOGY, 1983, 168 (04) : 867 - 885
  • [5] The Protein Data Bank
    Berman, HM
    Westbrook, J
    Feng, Z
    Gilliland, G
    Bhat, TN
    Weissig, H
    Shindyalov, IN
    Bourne, PE
    [J]. NUCLEIC ACIDS RESEARCH, 2000, 28 (01) : 235 - 242
  • [6] Crystallography & NMR system:: A new software suite for macromolecular structure determination
    Brunger, AT
    Adams, PD
    Clore, GM
    DeLano, WL
    Gros, P
    Grosse-Kunstleve, RW
    Jiang, JS
    Kuszewski, J
    Nilges, M
    Pannu, NS
    Read, RJ
    Rice, LM
    Simonson, T
    Warren, GL
    [J]. ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1998, 54 : 905 - 921
  • [7] MOLECULAR-DYNAMICS SIMULATION OF PROTEIN DENATURATION - SOLVATION OF THE HYDROPHOBIC CORES AND SECONDARY STRUCTURE OF BARNASE
    CAFLISCH, A
    KARPLUS, M
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1994, 91 (05) : 1746 - 1750
  • [8] AN AUTOMATED-SYSTEM FOR MICROBATCH PROTEIN CRYSTALLIZATION AND SCREENING
    CHAYEN, NE
    STEWART, PDS
    MAEDER, DL
    BLOW, DM
    [J]. JOURNAL OF APPLIED CRYSTALLOGRAPHY, 1990, 23 : 297 - 302
  • [9] THE MOLECULAR-SURFACE PACKAGE
    CONNOLLY, ML
    [J]. JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 1993, 11 (02) : 139 - 143
  • [10] CREIGHTON TE, 1966, J BIOL CHEM, V241, P4616