Alkaline Hydrolysis of Ethylene Phosphate: An Ab Initio Study by Supermolecule Model and Polarizable Continuum Approach

被引:12
作者
Xia, Futing [1 ]
Zhu, Hua [1 ,2 ]
机构
[1] Sichuan Univ, Sch Chem, Chengdu 610064, Peoples R China
[2] Sichuan Univ, State Key Lab Biotherapy, Chengdu 610064, Peoples R China
基金
中国国家自然科学基金;
关键词
ethylene phosphate; alkaline hydrolysis; supermolecule-continuum model; solvent effect; B3LYP; BASE-CATALYZED-HYDROLYSIS; FREE-ENERGY BARRIERS; TRANSITION-STATE STRUCTURES; ESTER HYDROLYSIS; PHOSPHODIESTER BONDS; REACTION PATHWAYS; AQUEOUS-SOLUTION; METAL-IONS; CLEAVAGE; RNA;
D O I
10.1002/jcc.21834
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The alkaline hydrolysis reaction of ethylene phosphate (EP) has been investigated using a supermolecule model, in which several explicit water molecules are included. The structures and single-point energies for all of the stationary points are calculated in the gas phase and in solution at the B3LYP/6-31++G(df,p) and MP2/6-311++G(df,2p) levels. The effect of water bulk solvent is introduced by the polarizable continuum model (PCM). Water attack and hydroxide attack pathways are taken into account for the alkaline hydrolysis of EP. An associative mechanism is observed for both of the two pathways with a kinetically insignificant intermediate. The water attack pathway involves a water molecule attacking and a proton transfer from the attacking water to the hydroxide in the first step, followed by an endocyclic bond cleavage to the leaving group. While in the first step of the hydroxide attack pathway the nucleophile is the hydroxide anion. The calculated barriers in aqueous solution for the water attack and hydroxide attack pathways are all about 22 kcal/mol. The excellent agreement between the calculated and observed values demonstrates that both of the two pathways are possible for the alkaline hydrolysis of EP. (C) 2011 Wiley Periodicals, Inc. J Comput Chem 32: 2545-2554, 2011
引用
收藏
页码:2545 / 2554
页数:10
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