Weak Shape Anisotropy Leads to a Nonmonotonic Contribution to Crowding, Impacting Protein Dynamics under Physiologically Relevant Conditions

被引:16
作者
Myung, Jin Suk [1 ]
Roosen-Runge, Felix [1 ]
Winkler, Roland G. [2 ,3 ]
Gompper, Gerhard [2 ,3 ]
Schurtenberger, Peter [1 ]
Stradner, Anna [1 ]
机构
[1] Lund Univ, Dept Chem, Div Phys Chem, SE-22100 Lund, Sweden
[2] Forschungszentrum Julich, Theoret Soft Matter & Biophys, Inst Complex Syst, D-52425 Julich, Germany
[3] Forschungszentrum Julich, Inst Adv Simulat, D-52425 Julich, Germany
基金
瑞典研究理事会; 欧洲研究理事会;
关键词
RED-BLOOD-CELLS; HYDRODYNAMIC INTERACTIONS; SELF-DIFFUSION; CONFINEMENT; PARTICLES; VESICLES;
D O I
10.1021/acs.jpcb.8b07901
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The effect of a nonspherical particle shape on the dynamics in crowded solutions presents a significant challenge for a comprehensive understanding of interaction and structural relaxation in biological and soft matter. We report that small deviations from a spherical shape induce a nonmonotonic contribution to the crowding effect on the short-time cage diffusion compared with spherical systems, using molecular dynamics simulations with mesoscale hydrodynamics of a multiparticle collision dynamics fluid in semidilute systems with volume fractions smaller than 0.35. We show that the nonmonotonic effect due to anisotropy is caused by the combination of a reduced relative mobility over the entire concentration range and a looser and less homogeneous cage packing of nonspherical particles. Our finding stresses that nonsphericity induces new complexity, which cannot be accounted for in effective sphere models, and is of great interest in applications such as formulations as well as for the fundamental understanding of soft matter in general and crowding effects in living cells in particular.
引用
收藏
页码:12396 / 12402
页数:7
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