Denoising of genetic switches based on Parrondo's paradox

被引:8
作者
Fotoohinasab, Atiyeh [1 ]
Fatemizadeh, Emad [2 ]
Pezeshk, Hamid [3 ,4 ,5 ]
Sadeghi, Mehdi [6 ]
机构
[1] Islamic Azad Univ, Sci & Res Branch, Dept Biomed Engn, Tehran, Iran
[2] Sharif Univ Technol, Dept Elect Engn, Biomed Signal & Image Proc Lab BiSIPL, Tehran, Iran
[3] Univ Tehran, Coll Sci, Sch Math Stat & Comp Sci, Tehran, Iran
[4] Univ Tehran, Coll Sci, Ctr Excellence Biomath, Tehran, Iran
[5] Inst Res Fundamental Sci IPM, Sch Biol Sci, Tehran, Iran
[6] Natl Inst Genet Engn & Biotechnol, Dept Med Genet, Tehran, Iran
关键词
Genetic switches; Stochastic simulation; Parrondo's paradox; Denoising; Cellular differentiation; BROWNIAN RATCHETS; TOGGLE SWITCH; STOCHASTIC SIMULATION; REGULATORY NETWORKS; DECISION-MAKING; FEEDBACK LOOPS; GAME-THEORY; CELL FATE; DYNAMICS; EXPRESSION;
D O I
10.1016/j.physa.2017.10.009
中图分类号
O4 [物理学];
学科分类号
0702 ;
摘要
Random decision making in genetic switches can be modeled as tossing a biased coin. In other word, each genetic switch can be considered as a game in which the reactive elements compete with each other to increase their molecular concentrations. The existence of a very small number of reactive element molecules has caused the neglect of effects of noise to be inevitable. Noise can lead to undesirable cell fate in cellular differentiation processes. In this paper, we study the robustness to noise in genetic switches by considering another switch to have a new gene regulatory network (GRN) in which both switches have been affected by the same noise and for this purpose, we will use Parrondo's paradox. We introduce two networks of games based on possible regulatory relations between genes. Our results show that the robustness to noise can increase by combining these noisy switches. We also describe how one of the switches in network II can model lysisilysogeny decision making of bacteriophage lambda in Escherichia coli and we change its fate by another switch. (C) 2017 Published by Elsevier B.V.
引用
收藏
页码:410 / 420
页数:11
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