Quantification of spatio-temporal scales of dynamical heterogeneity of water near lipid membranes above supercooling

被引:13
作者
Srivastava, Abhinav [1 ]
Karmakar, Smarajit [2 ]
Debnath, Ananya [1 ]
机构
[1] Indian Inst Technol Jodhpur, Dept Chem, Jodhpur 342037, Rajasthan, India
[2] Tata Inst Fundamental Res, Ctr Interdisciplinary Sci, Hyderabad 500107, India
关键词
HYDROGEN-BOND DYNAMICS; PARTICLE MESH EWALD; MOLECULAR-DYNAMICS; DIELECTRIC-RELAXATION; BIOLOGICAL WATER; CONFINED WATER; H-2; NMR; BILAYER; PROTEIN; MODEL;
D O I
10.1039/c9sm01725a
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
A hydrated 1,2-dimyristoyl-sn-glycero-3-phosphorylcholine (DMPC) lipid membrane is investigated using an all atom molecular dynamics simulation at 308 K to determine the physical sources of universal slow relaxations of hydration layers and length-scale of the spatially heterogeneous dynamics. Continuously residing interface water (IW) molecules hydrogen bonded to different moieties of lipid heads in the membrane are identified. The non-Gaussian parameters of all classes of IW molecules show a cross-over from cage vibration to translational diffusion. A significant non-Gaussianity is observed for the IW molecules exhibiting large length correlations in translational van Hove functions. Two time-scales for the ballistic motions and hopping transitions are obtained from the self intermediate scattering functions of the IW molecules with an additional long relaxation, which disappears for bulk water. The long relaxation time-scales for the IW molecules obtained from the self intermediate scattering functions are in good accordance with the hydrogen bond relaxation time-scales irrespective of the nature of the chemical confinement and the confinement lifetime. Employing a block analysis approach, the length-scale of dynamical heterogeneities is captured from a transition from non-Gaussianity to Gaussianity in van Hove correlation functions of the IW molecules. The heterogeneity length-scale is comparable to the wave-length of the small and weak undulations of the membrane calculated by Fourier transforms of lipid tilts. This opens up a new avenue towards a possible correlation between heterogeneity length-scale and membrane curvature more significant for rippled membranes. Thus, our analyses provide a measure towards the spatio-temporal scale of dynamical heterogeneity of confined water near membranes.
引用
收藏
页码:9805 / 9815
页数:11
相关论文
共 99 条
[1]   A general purpose model for the condensed phases of water: TIP4P/2005 [J].
Abascal, JLF ;
Vega, C .
JOURNAL OF CHEMICAL PHYSICS, 2005, 123 (23)
[2]   Fickian yet non-Gaussian behaviour: A dominant role of the intermittent dynamics [J].
Acharya, Sayantan ;
Nandi, Ujjwal Kumar ;
Bhattacharyya, Sarika Maitra .
JOURNAL OF CHEMICAL PHYSICS, 2017, 146 (13)
[3]  
Allen T. D., 1987, COMPUTER SIMULATIONS
[4]   Detailed structure and dynamics of bicelle phospholipids using selectively deuterated and perdeuterated labels.: 2H NMR and molecular mechanics study [J].
Aussenac, F ;
Laguerre, M ;
Schmitter, JM ;
Dufourc, EJ .
LANGMUIR, 2003, 19 (25) :10468-10479
[5]   Strong Dynamical Heterogeneity and Universal Scaling in Driven Granular Fluids [J].
Avila, Karina E. ;
Castillo, Horacio E. ;
Fiege, Andrea ;
Vollmayr-Lee, Katharina ;
Zippelius, Annette .
PHYSICAL REVIEW LETTERS, 2014, 113 (02)
[6]   Hydrogen-bond dynamics near a micellar surface: Origin of the universal slow relaxation at complex aqueous interfaces [J].
Balasubramanian, S ;
Pal, S ;
Bagchi, B .
PHYSICAL REVIEW LETTERS, 2002, 89 (11) :1-115505
[7]  
BEKKER H, 1993, PHYSICS COMPUTING '92, P252
[8]   Structure and dynamics of water near hydrophilic surfaces [J].
Bellissent-Funel, MC .
JOURNAL OF MOLECULAR LIQUIDS, 1998, 78 (1-2) :19-28
[9]   GROMACS - A MESSAGE-PASSING PARALLEL MOLECULAR-DYNAMICS IMPLEMENTATION [J].
BERENDSEN, HJC ;
VANDERSPOEL, D ;
VANDRUNEN, R .
COMPUTER PHYSICS COMMUNICATIONS, 1995, 91 (1-3) :43-56
[10]   MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH [J].
BERENDSEN, HJC ;
POSTMA, JPM ;
VANGUNSTEREN, WF ;
DINOLA, A ;
HAAK, JR .
JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) :3684-3690