Immune monitoring technology primer: whole exome sequencing for neoantigen discovery and precision oncology

被引:11
作者
Kvistborg, Pia [1 ]
Clynes, Raphael [2 ]
Song, Wenru [3 ]
Yuan, Jianda [4 ]
机构
[1] Netherlands Canc Inst, Postbus 90203, NL-1006 BE Amsterdam, Netherlands
[2] Bristol Myers Squibb Co, 3551 Lawrenceville Rd, Princeton, NJ 08648 USA
[3] AstraZeneca, One MedImmune Way, Gaithersburg, MD 20878 USA
[4] Merck Res Labs, Oncol Clin Res, Rahway, NJ 07065 USA
关键词
Immune monitoring; Whole exome sequencing; Biomarker; Neoantigen; Mutation load; Personalized cancer immunotherapy; Precision oncology; ANALYSIS REVEALS; PD-1; BLOCKADE; CANCER; NEOEPITOPES; MUTATIONS; ANTIGENS; CELLS;
D O I
10.1186/s40425-016-0126-0
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
[No abstract available]
引用
收藏
页数:4
相关论文
共 23 条
[1]   Review of Current Methods, Applications, and Data Management for the Bioinformatics Analysis of Whole Exome Sequencing [J].
Bao, Riyue ;
Huang, Lei ;
Andrade, Jorge ;
Tan, Wei ;
Kibbe, Warren A. ;
Jiang, Hongmei ;
Feng, Gang .
CANCER INFORMATICS, 2014, 13 :67-82
[2]   Exploiting the Mutanome for Tumor Vaccination [J].
Castle, John C. ;
Kreiter, Sebastian ;
Diekmann, Jan ;
Loewer, Martin ;
Van de Roemer, Niels ;
de Graaf, Jos ;
Selmi, Abderraouf ;
Diken, Mustafa ;
Boegel, Sebastian ;
Paret, Claudia ;
Koslowski, Michael ;
Kuhn, Andreas N. ;
Britten, Cedrik M. ;
Huber, Christoph ;
Tuereci, Oezlem ;
Sahin, Ugur .
CANCER RESEARCH, 2012, 72 (05) :1081-1091
[3]   Sensitive detection of somatic point mutations in impure and heterogeneous cancer samples [J].
Cibulskis, Kristian ;
Lawrence, Michael S. ;
Carter, Scott L. ;
Sivachenko, Andrey ;
Jaffe, David ;
Sougnez, Carrie ;
Gabriel, Stacey ;
Meyerson, Matthew ;
Lander, Eric S. ;
Getz, Gad .
NATURE BIOTECHNOLOGY, 2013, 31 (03) :213-219
[4]   Genomic and bioinformatic profiling of mutational neoepitopes reveals new rules to predict anticancer immunogenicity [J].
Duan, Fei ;
Duitama, Jorge ;
Al Seesi, Sahar ;
Ayres, Cory M. ;
Corcelli, Steven A. ;
Pawashe, Arpita P. ;
Blanchard, Tatiana ;
McMahon, David ;
Sidney, John ;
Sette, Alessandro ;
Baker, Brian M. ;
Mandoiu, Ion I. ;
Srivastava, Pramod K. .
JOURNAL OF EXPERIMENTAL MEDICINE, 2014, 211 (11) :2231-2248
[5]   HLA-Binding Properties of Tumor Neoepitopes in Humans [J].
Fritsch, Edward F. ;
Rajasagi, Mohini ;
Ott, Patrick A. ;
Brusic, Vladimir ;
Hacohen, Nir ;
Wu, Catherine J. .
CANCER IMMUNOLOGY RESEARCH, 2014, 2 (06) :522-529
[6]   The odds of immunotherapy success [J].
Gubin, Matthew M. ;
Schreiber, Robert D. .
SCIENCE, 2015, 350 (6257) :158-159
[7]   Checkpoint blockade cancer immunotherapy targets tumour-specific mutant antigens [J].
Gubin, Matthew M. ;
Zhang, Xiuli ;
Schuster, Heiko ;
Caron, Etienne ;
Ward, Jeffrey P. ;
Noguchi, Takuro ;
Ivanova, Yulia ;
Hundal, Jasreet ;
Arthur, Cora D. ;
Krebber, Willem-Jan ;
Mulder, Gwenn E. ;
Toebes, Mireille ;
Vesely, Matthew D. ;
Lam, Samuel S. K. ;
Korman, Alan J. ;
Allison, James P. ;
Freeman, Gordon J. ;
Sharpe, Arlene H. ;
Pearce, Erika L. ;
Schumacher, Ton N. ;
Aebersold, Ruedi ;
Rammensee, Hans-Georg ;
Melief, Cornelis J. M. ;
Mardis, Elaine R. ;
Gillanders, William E. ;
Artyomov, Maxim N. ;
Schreiber, Robert D. .
NATURE, 2014, 515 (7528) :577-+
[8]   Mutant MHC class II epitopes drive therapeutic immune responses to cancer [J].
Kreiter, Sebastian ;
Vormehr, Mathias ;
van de Roemer, Niels ;
Diken, Mustafa ;
Loewer, Martin ;
Diekmann, Jan ;
Boegel, Sebastian ;
Schroers, Barbara ;
Vascotto, Fulvia ;
Castle, John C. ;
Tadmor, Arbel D. ;
Schoenberger, Stephen P. ;
Huber, Christoph ;
Tuereci, Oezlem ;
Sahin, Ugur .
NATURE, 2015, 520 (7549) :692-U269
[9]   Mutational heterogeneity in cancer and the search for new cancer-associated genes [J].
Lawrence, Michael S. ;
Stojanov, Petar ;
Polak, Paz ;
Kryukov, Gregory V. ;
Cibulskis, Kristian ;
Sivachenko, Andrey ;
Carter, Scott L. ;
Stewart, Chip ;
Mermel, Craig H. ;
Roberts, Steven A. ;
Kiezun, Adam ;
Hammerman, Peter S. ;
McKenna, Aaron ;
Drier, Yotam ;
Zou, Lihua ;
Ramos, Alex H. ;
Pugh, Trevor J. ;
Stransky, Nicolas ;
Helman, Elena ;
Kim, Jaegil ;
Sougnez, Carrie ;
Ambrogio, Lauren ;
Nickerson, Elizabeth ;
Shefler, Erica ;
Cortes, Maria L. ;
Auclair, Daniel ;
Saksena, Gordon ;
Voet, Douglas ;
Noble, Michael ;
DiCara, Daniel ;
Lin, Pei ;
Lichtenstein, Lee ;
Heiman, David I. ;
Fennell, Timothy ;
Imielinski, Marcin ;
Hernandez, Bryan ;
Hodis, Eran ;
Baca, Sylvan ;
Dulak, Austin M. ;
Lohr, Jens ;
Landau, Dan-Avi ;
Wu, Catherine J. ;
Melendez-Zajgla, Jorge ;
Hidalgo-Miranda, Alfredo ;
Koren, Amnon ;
McCarroll, Steven A. ;
Mora, Jaume ;
Lee, Ryan S. ;
Crompton, Brian ;
Onofrio, Robert .
NATURE, 2013, 499 (7457) :214-218
[10]   PD-1 Blockade in Tumors with Mismatch-Repair Deficiency [J].
Le, D. T. ;
Uram, J. N. ;
Wang, H. ;
Bartlett, B. R. ;
Kemberling, H. ;
Eyring, A. D. ;
Skora, A. D. ;
Luber, B. S. ;
Azad, N. S. ;
Laheru, D. ;
Biedrzycki, B. ;
Donehower, R. C. ;
Zaheer, A. ;
Fisher, G. A. ;
Crocenzi, T. S. ;
Lee, J. J. ;
Duffy, S. M. ;
Goldberg, R. M. ;
de la Chapelle, A. ;
Koshiji, M. ;
Bhaijee, F. ;
Huebner, T. ;
Hruban, R. H. ;
Wood, L. D. ;
Cuka, N. ;
Pardoll, D. M. ;
Papadopoulos, N. ;
Kinzler, K. W. ;
Zhou, S. ;
Cornish, T. C. ;
Taube, J. M. ;
Anders, R. A. ;
Eshleman, J. R. ;
Vogelstein, B. ;
Diaz, L. A., Jr. .
NEW ENGLAND JOURNAL OF MEDICINE, 2015, 372 (26) :2509-2520