Rapid bio-barcode assay for multiplex DNA detection based on capillary DNA Analyzer

被引:15
作者
He, MingXing [1 ,2 ]
Li, Kai [1 ]
Mao, JunHua [1 ]
Zhou, YuXun [1 ,2 ]
机构
[1] DongHua Univ, Inst Biol Sci & Technol, Shanghai 201620, Peoples R China
[2] E China Univ Sci & Technol, Inst Bioengn, Coll Biochem & Mol Biol, Shanghai 200237, Peoples R China
关键词
DNA detection; nanogold particles; bio-barcode assay;
D O I
10.1016/j.jviromet.2008.03.005
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The detection of virus at low copy number is important for clinical diagnosis. In this study, a rapid bio-barcode assay was developed and it could detect short sequences of four types of virus DNA simultaneously at the concentration as low as 5 pmol/L in 40 min with capillary 3730 DNA Analyzer. The background of the assay using high salt concentration prepared nanogold particle probes was five times less than that of the assay using conventionally prepared probes. With further optimization, the specificity of the complementary strands to the noncomplementary strands observed in the assay approached 140:1. Compared with the conventional bio-barcode assay, the current assay provides an alternative enzyme and labor-free selection of timesaving, better sensitivity and specificity, as well as higher throughput. (C) 2008 Elsevier B.V. All rights reserved.
引用
收藏
页码:126 / 131
页数:6
相关论文
共 25 条
  • [1] Gold nanoparticle-based quantitative electrochemical detection of amplified human cytomegalovirus DNA using disposable microband electrodes
    Authier, L
    Grossiord, C
    Brossier, P
    Limoges, B
    [J]. ANALYTICAL CHEMISTRY, 2001, 73 (18) : 4450 - 4456
  • [2] SNP identification in unamplified human genomic DNA with gold nanoparticle probes
    Bao, YP
    Huber, M
    Wei, TF
    Marla, SS
    Storhoff, JJ
    Muller, UR
    [J]. NUCLEIC ACIDS RESEARCH, 2005, 33 (02) : e15
  • [3] Genome-wide mapping with biallelic markers in Arabidopsis thaliana
    Cho, RJ
    Mindrinos, M
    Richards, DR
    Sapolsky, RJ
    Anderson, M
    Drenkard, E
    Dewdney, L
    Reuber, TL
    Stammers, M
    Federspiel, N
    Theologis, A
    Yang, WH
    Hubbell, E
    Au, M
    Chung, EY
    Lashkari, D
    Lemieux, B
    Dean, C
    Lipshutz, RJ
    Ausubel, FM
    Davis, RW
    Oefner, PJ
    [J]. NATURE GENETICS, 1999, 23 (02) : 203 - 207
  • [4] Strategies for mutational analysis of the large multiexon ATM gene using high-density oligonucleotide arrays
    Hacia, JC
    Sun, B
    Hunt, N
    Edgemon, K
    Mosbrook, D
    Robbins, C
    Fodor, SPA
    Tagle, DA
    Collins, FS
    [J]. GENOME RESEARCH, 1998, 8 (12) : 1245 - 1258
  • [5] The essential prerequisites for quantitative RT-PCR
    Halford, WP
    [J]. NATURE BIOTECHNOLOGY, 1999, 17 (09) : 835 - 835
  • [6] DNA dissociation and degradation at gold nanoparticle surfaces
    Herdt, Aimee R.
    Drawz, Sarah M.
    Kang, Youngjong
    Taton, T. Andrew
    [J]. COLLOIDS AND SURFACES B-BIOINTERFACES, 2006, 51 (02) : 130 - 139
  • [7] Nonenzymatic detection of bacterial genomic DNA using the bio bar code assay
    Hill, Haley D.
    Vega, Rafael A.
    Mirkin, Chad A.
    [J]. ANALYTICAL CHEMISTRY, 2007, 79 (23) : 9218 - 9223
  • [8] Use of a steroid cyclic disulfide anchor in constructing gold nanoparticle-oligonucleotide conjugates
    Letsinger, RL
    Elghanian, R
    Viswanadham, G
    Mirkin, CA
    [J]. BIOCONJUGATE CHEMISTRY, 2000, 11 (02) : 289 - 291
  • [9] Multiple thiol-anchor capped DNA-gold nanoparticle conjugates
    Li, Z
    Jin, RC
    Mirkin, CA
    Letsinger, RL
    [J]. NUCLEIC ACIDS RESEARCH, 2002, 30 (07) : 1558 - 1562
  • [10] MIRKIN CA, 1996, NATURE, V382, P609