共 36 条
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[Anonymous], 2010, Free Energy Computations: A Mathematical Perspective
[2]
Well-tempered metadynamics: A smoothly converging and tunable free-energy method
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Barducci, Alessandro
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Bussi, Giovanni
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Parrinello, Michele
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PHYSICAL REVIEW LETTERS,
2008, 100 (02)

Barducci, Alessandro
论文数: 0 引用数: 0
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机构:
Fic Ctr Studi & Ric Enrico Fermi, Museo Storico, I-00184 Rome, Italy
Ist Nazl Fis Nucl, Sez Roma Tor Vergata, I-00133 Rome, Italy
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Fic Ctr Studi & Ric Enrico Fermi, Museo Storico, I-00184 Rome, Italy

Bussi, Giovanni
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Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Fic Ctr Studi & Ric Enrico Fermi, Museo Storico, I-00184 Rome, Italy

Parrinello, Michele
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h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Fic Ctr Studi & Ric Enrico Fermi, Museo Storico, I-00184 Rome, Italy
[3]
Reconstructing the Equilibrium Boltzmann Distribution from Well-Tempered Metadynamics
[J].
Bonomi, M.
;
Barducci, A.
;
Parrinello, M.
.
JOURNAL OF COMPUTATIONAL CHEMISTRY,
2009, 30 (11)
:1615-1621

Bonomi, M.
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机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland

Barducci, A.
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机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland

Parrinello, M.
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h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
[4]
Promoting transparency and reproducibility in enhanced molecular simulations
[J].
Bonomi, Massimiliano
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Bussi, Giovanni
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Camilloni, Carlo
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Tribello, Gareth A.
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Banas, Pavel
;
Barducci, Alessandro
;
Bernetti, Mattia
;
Bolhuis, Peter G.
;
Bottaro, Sandro
;
Branduardi, Davide
;
Capelli, Riccardo
;
Carloni, Paolo
;
Ceriotti, Michele
;
Cesari, Andrea
;
Chen, Haochuan
;
Chen, Wei
;
Colizzi, Francesco
;
De, Sandip
;
De La Pierre, Marco
;
Donadio, Davide
;
Drobot, Viktor
;
Ensing, Bernd
;
Ferguson, Andrew L.
;
Filizola, Marta
;
Fraser, James S.
;
Fu, Haohao
;
Gasparotto, Piero
;
Gervasio, Francesco Luigi
;
Giberti, Federico
;
Gil-Ley, Alejandro
;
Giorgino, Toni
;
Heller, Gabriella T.
;
Hocky, Glen M.
;
Iannuzzi, Marcella
;
Invernizzi, Michele
;
Jelfs, Kim E.
;
Jussupow, Alexander
;
Kirilin, Evgeny
;
Laio, Alessandro
;
Limongelli, Vittorio
;
Lindorff-Larsen, Kresten
;
Lohr, Thomas
;
Marinelli, Fabrizio
;
Martin-Samos, Layla
;
Masetti, Matteo
;
Meyer, Ralf
;
Michaelides, Angelos
;
Molteni, Carla
;
Morishita, Tetsuya
;
Nava, Marco
.
NATURE METHODS,
2019, 16 (08)
:670-673

Bonomi, Massimiliano
论文数: 0 引用数: 0
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机构:
Inst Pasteur, Dept Struct Biol & Chem, Paris, France
CNRS, UMR 3528, Paris, France Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Bussi, Giovanni
论文数: 0 引用数: 0
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机构:
Int Sch Adv Studies SISSA, Trieste, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Camilloni, Carlo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Milan, Dipartimento Biosci, Milan, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Tribello, Gareth A.
论文数: 0 引用数: 0
h-index: 0
机构:
Queens Univ Belfast, Atomist Simulat Ctr, Belfast, Antrim, North Ireland Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Banas, Pavel
论文数: 0 引用数: 0
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机构:
Palacky Univ, Fac Sci, Olomouc, Czech Republic Inst Pasteur, Dept Struct Biol & Chem, Paris, France

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Bernetti, Mattia
论文数: 0 引用数: 0
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机构:
Int Sch Adv Studies SISSA, Trieste, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Bolhuis, Peter G.
论文数: 0 引用数: 0
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机构:
Univ Amsterdam, Vant Hoff Inst Mol Sci, Amsterdam, Netherlands Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Bottaro, Sandro
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h-index: 0
机构:
Italian Inst Technol, Genoa, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Branduardi, Davide
论文数: 0 引用数: 0
h-index: 0
机构:
Schrodinger Inc, Cambridge, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Capelli, Riccardo
论文数: 0 引用数: 0
h-index: 0
机构:
Forschungszentrum Julich, Computat Biomed IAS 5 INM 9, Julich, Germany Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Carloni, Paolo
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机构:
Forschungszentrum Julich, Computat Biomed IAS 5 INM 9, Julich, Germany Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Ceriotti, Michele
论文数: 0 引用数: 0
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机构:
Ecole Polytech Federale Lausanne, Inst Mat, Lausanne, Switzerland
Natl Ctr Computat Design & Discovery Novel Mat MA, Lausanne, Switzerland Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Cesari, Andrea
论文数: 0 引用数: 0
h-index: 0
机构:
Int Sch Adv Studies SISSA, Trieste, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Chen, Haochuan
论文数: 0 引用数: 0
h-index: 0
机构:
Nankai Univ, Coll Chem, Res Ctr Analyt Sci, Tianjin, Peoples R China Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Chen, Wei
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Illinois, Dept Phys, Urbana, IL USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Colizzi, Francesco
论文数: 0 引用数: 0
h-index: 0
机构:
BIST, Inst Res Biomed IRB Barcelona, Barcelona, Spain Inst Pasteur, Dept Struct Biol & Chem, Paris, France

De, Sandip
论文数: 0 引用数: 0
h-index: 0
机构:
Ecole Polytech Federale Lausanne, Inst Mat, Lausanne, Switzerland
Inst Pasteur, Dept Struct Biol & Chem, Paris, France

De La Pierre, Marco
论文数: 0 引用数: 0
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机构:
Pawsey Supercomp Ctr, Kensington, NSW, Australia Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Donadio, Davide
论文数: 0 引用数: 0
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机构:
Univ Calif Davis, Dept Chem, Davis, CA 95616 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Drobot, Viktor
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机构:
Lomonosov Moscow State Univ, Dept Chem, Moscow, Russia Inst Pasteur, Dept Struct Biol & Chem, Paris, France

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Ferguson, Andrew L.
论文数: 0 引用数: 0
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机构:
Univ Chicago, Pritzker Sch Mol Engn, Chicago, IL 60637 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Filizola, Marta
论文数: 0 引用数: 0
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机构:
Icahn Sch Med Mt Sinai, Dept Pharmacol Sci, New York, NY 10029 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Fraser, James S.
论文数: 0 引用数: 0
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机构:
Univ Calif San Francisco, Dept Bioengn & Therapeut Sci, San Francisco, CA 94143 USA
Univ Calif San Francisco, Calif Inst Quantitat Biol, San Francisco, CA 94143 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Fu, Haohao
论文数: 0 引用数: 0
h-index: 0
机构:
Nankai Univ, Coll Chem, Res Ctr Analyt Sci, Tianjin, Peoples R China Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Gasparotto, Piero
论文数: 0 引用数: 0
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机构:
UCL, Dept Phys & Astron, London, England
Thomas Young Ctr, London, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Gervasio, Francesco Luigi
论文数: 0 引用数: 0
h-index: 0
机构:
UCL, Dept Chem, London, England
UCL, Inst Struct & Mol Biol, London, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Giberti, Federico
论文数: 0 引用数: 0
h-index: 0
机构:
Ecole Polytech Federale Lausanne, Inst Mat, Lausanne, Switzerland
Natl Ctr Computat Design & Discovery Novel Mat MA, Lausanne, Switzerland Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Gil-Ley, Alejandro
论文数: 0 引用数: 0
h-index: 0
机构:
NHLBI, NIH, Bldg 10, Bethesda, MD 20892 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Giorgino, Toni
论文数: 0 引用数: 0
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机构:
CNR, Biophys Inst, IBF CNR, Milan, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Heller, Gabriella T.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Cambridge, Dept Chem, Cambridge, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Hocky, Glen M.
论文数: 0 引用数: 0
h-index: 0
机构:
NYU, Dept Chem, New York, NY USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Iannuzzi, Marcella
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Zurich, Dept Chem, Zurich, Switzerland Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Invernizzi, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Phys, Lugano, Switzerland
Univ Svizzera Italiana, Fac Informat, Lugano, Switzerland Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Jelfs, Kim E.
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机构:
Imperial Coll London, Dept Chem, London, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

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Laio, Alessandro
论文数: 0 引用数: 0
h-index: 0
机构:
Int Sch Adv Studies SISSA, Trieste, Italy
Abdus Salaam Int Ctr Theoret Phys, Trieste, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Limongelli, Vittorio
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Svizzera Italiana, Inst Computat Sci, Fac Biomed Sci, Lugano, Switzerland
Univ Naples Federico II, Dept Pharm, Naples, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Lindorff-Larsen, Kresten
论文数: 0 引用数: 0
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机构:
Univ Copenhagen, Dept Biol, Copenhagen, Denmark Inst Pasteur, Dept Struct Biol & Chem, Paris, France

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Marinelli, Fabrizio
论文数: 0 引用数: 0
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机构:
NHLBI, NIH, Bldg 10, Bethesda, MD 20892 USA Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Martin-Samos, Layla
论文数: 0 引用数: 0
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机构:
Ist Off Mat, CNR IOM Democritos Natl Simulat Ctr, Trieste, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Masetti, Matteo
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Bologna, Alma Mater Studiorum, Dept Pharm & Biotechnol, Bologna, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Meyer, Ralf
论文数: 0 引用数: 0
h-index: 0
机构:
Graz Univ Technol, Inst Expt Phys, Graz, Austria Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Michaelides, Angelos
论文数: 0 引用数: 0
h-index: 0
机构:
UCL, Dept Phys & Astron, London, England
Thomas Young Ctr, London, England
Univ Bologna, Alma Mater Studiorum, Dept Pharm & Biotechnol, Bologna, Italy Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Molteni, Carla
论文数: 0 引用数: 0
h-index: 0
机构:
Kings Coll London, Dept Phys, London, England Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Morishita, Tetsuya
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Pasteur, Dept Struct Biol & Chem, Paris, France

Nava, Marco
论文数: 0 引用数: 0
h-index: 0
机构:
Inst Pasteur, Dept Struct Biol & Chem, Paris, France
[5]
Metadynamics with Adaptive Gaussians
[J].
Branduardi, Davide
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Bussi, Giovanni
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Parrinello, Michele
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JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2012, 8 (07)
:2247-2254

Branduardi, Davide
论文数: 0 引用数: 0
h-index: 0
机构:
Max Planck Inst Biophys, Theoret Mol Biophys Grp, D-60438 Frankfurt, Germany SISSA Scuola Int Super Avanzati, I-34136 Trieste, Italy

Bussi, Giovanni
论文数: 0 引用数: 0
h-index: 0
机构:
SISSA Scuola Int Super Avanzati, I-34136 Trieste, Italy SISSA Scuola Int Super Avanzati, I-34136 Trieste, Italy

Parrinello, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
Univ Svizzera Italiana, Ist Sci Computazionali, Fac Informat, CH-6900 Lugano, Switzerland SISSA Scuola Int Super Avanzati, I-34136 Trieste, Italy
[6]
Transition-Tempered Metadynamics: Robust, Convergent Metadynamics via On-the-Fly Transition Barrier Estimation
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Dama, James F.
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Rotskoff, Grant
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Parrinello, Michele
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Voth, Gregory A.
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JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2014, 10 (09)
:3626-3633

Dama, James F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Computat Inst, Chicago, IL 60637 USA Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA

Rotskoff, Grant
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Computat Inst, Chicago, IL 60637 USA Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA

Parrinello, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, Zurich, Switzerland
Univ Svizzera Italiana, Fac Informat, Ist Sci Computaz, CH-6900 Lugano, Switzerland Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA

Voth, Gregory A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
Univ Chicago, Computat Inst, Chicago, IL 60637 USA Univ Chicago, James Franck Inst, Inst Biophys Dynam, Dept Chem, Chicago, IL 60637 USA
[7]
Well-Tempered Metadynamics Converges Asymptotically
[J].
Dama, James F.
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Parrinello, Michele
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Voth, Gregory A.
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PHYSICAL REVIEW LETTERS,
2014, 112 (24)

Dama, James F.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA
Univ Chicago, Computat Inst, Chicago, IL 60637 USA Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA

Parrinello, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Italiana, ETH Zurich, Dept Chem & Appl Biosci, CH-6900 Lugano, Switzerland
Univ Italiana, Fac Informat, Ist Sci Computaz, CH-6900 Lugano, Switzerland Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA

Voth, Gregory A.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA
Univ Chicago, Computat Inst, Chicago, IL 60637 USA Univ Chicago, Dept Chem, James Franck Inst, Inst Biophys Dynam, Chicago, IL 60637 USA
[8]
Enhanced Sampling of Transition States
[J].
Debnath, Jayashrita
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Invernizzi, Michele
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Parrinello, Michele
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JOURNAL OF CHEMICAL THEORY AND COMPUTATION,
2019, 15 (04)
:2454-2459

Debnath, Jayashrita
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
USI, Fac Informat, Ist Sci Computaz, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland

Invernizzi, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
USI, Fac Informat, Ist Sci Computaz, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
Swiss Fed Inst Technol, Dept Phys, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland

Parrinello, Michele
论文数: 0 引用数: 0
h-index: 0
机构:
Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
USI, Fac Informat, Ist Sci Computaz, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
Ist Italiano Tecnol, Via Morego 30, I-16163 Genoa, Italy Swiss Fed Inst Technol, Dept Chem & Appl Biosci, USI Campus,Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[9]
Free Energy Calculations: An Efficient Adaptive Biasing Potential Method
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Dickson, Bradley M.
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Legoll, Frederic
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Lelievre, Tony
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Stoltz, Gabriel
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Fleurat-Lessard, Paul
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JOURNAL OF PHYSICAL CHEMISTRY B,
2010, 114 (17)
:5823-5830

Dickson, Bradley M.
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France
Univ Lyon, Ecole Normale Super Lyon, Chim Lab, UMR 5182, F-69364 Lyon 7, France Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France

Legoll, Frederic
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Paris Est, Inst Navier, Project MICMAC, Ecole Ponts ParisTech,INRIA,LAMI, F-77455 Marne La Vallee 2, France Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France

Lelievre, Tony
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France

Stoltz, Gabriel
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France

Fleurat-Lessard, Paul
论文数: 0 引用数: 0
h-index: 0
机构:
Univ Lyon, Ecole Normale Super Lyon, Chim Lab, UMR 5182, F-69364 Lyon 7, France Univ Paris Est, CERMICS, Project MICMAC, Ecole Ponts ParisTech,INRIA, F-77455 Marne La Vallee 2, France
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Girsanov reweighting for metadynamics simulations
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Donati, Luca
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Keller, Bettina G.
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JOURNAL OF CHEMICAL PHYSICS,
2018, 149 (07)

Donati, Luca
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Berlin, Dept Biol, Chem, Pharm, Takustr 3, D-14195 Berlin, Germany Free Univ Berlin, Dept Biol, Chem, Pharm, Takustr 3, D-14195 Berlin, Germany

Keller, Bettina G.
论文数: 0 引用数: 0
h-index: 0
机构:
Free Univ Berlin, Dept Biol, Chem, Pharm, Takustr 3, D-14195 Berlin, Germany Free Univ Berlin, Dept Biol, Chem, Pharm, Takustr 3, D-14195 Berlin, Germany