Rethinking Metadynamics: From Bias Potentials to Probability Distributions

被引:194
作者
Invernizzi, Michele [1 ,4 ]
Parrinello, Michele [1 ,2 ,3 ]
机构
[1] Swiss Fed Inst Technol, Dept Chem & Appl Biosci, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[2] Univ Svizzera Italiana, Inst Computat Sci, Fac Informat, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
[3] Italian Inst Technol, Via Morego 30, I-16163 Genoa, Italy
[4] Univ Svizzera Italiana, Natl Ctr Computat Design & Discovery Novel Mat MA, Fac Informat, Inst Computat Sci, Via Giuseppe Buffi 13, CH-6900 Lugano, Switzerland
基金
瑞士国家科学基金会;
关键词
FREE-ENERGY LANDSCAPES; RECONSTRUCTION; SURFACES;
D O I
10.1021/acs.jpclett.0c00497
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Metadynamics is an enhanced sampling method of great popularity, based on the on-the-fly construction of a bias potential that is a function of a selected number of collective variables. We propose here a change in perspective that shifts the focus from the bias to the probability distribution reconstruction while retaining some of the key characteristics of metadynamics, such as flexible on-the-fly adjustments to the free energy estimate. The result is an enhanced sampling method that presents a drastic improvement in convergence speed, especially when dealing with suboptimal and/or multidimensional sets of collective variables. The method is especially robust and easy to use and in fact requires only a few simple parameters to be set, and it has a straightforward reweighting scheme to recover the statistics of the unbiased ensemble. Furthermore, it gives more control of the desired exploration of the phase space since the deposited bias is not allowed to grow indefinitely and it does not push the simulation to uninteresting high free energy regions. We demonstrate the performance of the method in a number of representative examples.
引用
收藏
页码:2731 / 2736
页数:6
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