Toward a Universal Model To Calculate the Solvation Thermodynamics of Druglike Molecules: The Importance of New Experimental Databases

被引:37
作者
Palmer, David S. [1 ]
Frolov, Andrey I. [1 ]
Ratkova, Ekaterina L. [1 ]
Fedorov, Maxim V. [1 ]
机构
[1] Max Planck Inst Math Sci, DE-04103 Leipzig, Germany
关键词
hydration free energy; reference interaction site model; RISM; solubility; drug discovery; RISM/UC; bioavailability; in silico; virtual; screening; INTERACTION SITE MODEL; INTEGRAL-EQUATION THEORY; HYDRATION FREE-ENERGY; DENSITY-FUNCTIONAL THEORY; PEPTIDE CONFORMATIONS; EFFICIENT GENERATION; AQUEOUS-SOLUTION; WATER-MOLECULES; POLAR-MOLECULES; AM1-BCC MODEL;
D O I
10.1021/mp200119r
中图分类号
R-3 [医学研究方法]; R3 [基础医学];
学科分类号
1001 ;
摘要
We demonstrate that a new free energy functional in the integral equation theory of molecular liquids gives accurate calculations of hydration thermodynamics for drug-like molecules. The functional provides an improved description of excluded volume effects by incorporating two free coefficients. When the values of these coefficients are obtained from experimental data for simple organic molecules, the hydration free energies of an external test set of druglike molecules can be calculated with an accuracy of about 1 kcal/mol. The 3D RISM/UC method proposed here is easily implemented using existing computational software and allows in silico screening of the solvation thermodynamics of potential pharmaceutical molecules at significantly lower computational expense than explicit solvent simulations.
引用
收藏
页码:1423 / 1429
页数:7
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