Crystallization and preliminary X-ray diffraction analysis of the protease from Southampton norovirus complexed with a Michael acceptor inhibitor

被引:4
|
作者
Hussey, R. J. [2 ]
Coates, L. [3 ]
Gill, R. S. [1 ]
Wright, J. N. [2 ]
Sarwar, M. [2 ]
Coker, S. [1 ]
Erskine, P. T. [1 ]
Cooper, J. B. [1 ]
Wood, S. [1 ]
Clarke, I. N. [4 ]
Lambden, P. R. [4 ]
Broadbridge, R. [5 ]
Shoolingin-Jordan, P. M. [2 ]
机构
[1] UCL Dept Med, Ctr Amyloidosis & Acute Phase Prot, Lab Prot Crystallog, London NW3 2PF, England
[2] Univ Southampton, Sch Biol Sci, Southampton SO16 7PX, Hants, England
[3] Oak Ridge Natl Lab, Oak Ridge, TN 37831 USA
[4] Southampton Gen Hosp, Univ Med Sch, Div Infect Inflammat & Immun, Mol Microbiol Grp, Southampton SO16 6YD, Hants, England
[5] Peptide Prot Res Ltd, Wickham PO17 5DY, Hants, England
来源
ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS | 2010年 / 66卷
基金
英国惠康基金;
关键词
3C proteases; noroviruses; Michael acceptors; inhibitor complexes; STRUCTURE-BASED DESIGN; SOLID-PHASE SYNTHESIS; BIOLOGICAL EVALUATION; CLEAVAGE SITES; BINDING SITE; IDENTIFICATION; POLYPROTEIN; EXPRESSION; SEQUENCE; GENOME;
D O I
10.1107/S1744309110039059
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Noroviruses are the predominant cause of human epidemic nonbacterial gastroenteritis. Viral replication requires a cysteine protease that cleaves a 200 kDa viral polyprotein into its constituent functional parts. Here, the crystallization of the recombinant protease from the Southampton norovirus is described. Whilst the native crystals were found to diffract only to medium resolution (2.9 A), cocrystals of an inhibitor complex diffracted X-rays to 1.7 A resolution. The polypeptide inhibitor (Ac-EFQLQ-propenyl ethyl ester) possesses an amino-acid sequence designed to match the substrate specificity of the enzyme, but was synthesized with a reactive Michael acceptor group at the C-terminal end.
引用
收藏
页码:1544 / 1548
页数:5
相关论文
共 50 条
  • [21] PicW2 from Picea wilsonii: preparation, purification, crystallization and X-ray diffraction analysis
    Zhang, Bei
    Guo, Gangxing
    Lu, Fang
    Song, Ying
    Liu, Yong
    Xu, JiChen
    Gao, Wei
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2018, 74 : 363 - 366
  • [22] The macromolecular complex of ICP and falcipain-2 from Plasmodium: preparation, crystallization and preliminary X-ray diffraction analysis
    Hansen, Guido
    Schwarzloh, Britta
    Rennenberg, Annika
    Heussler, Volker T.
    Hilgenfeld, Rolf
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2011, 67 : 1406 - 1410
  • [23] Expression, purification, crystallization and preliminary X-ray diffraction analysis of Arabidopsis thaliana Deg8
    Shan, Xiaoyue
    Sun, Wei
    Fan, Haitian
    Jia, Minze
    Gao, Feng
    Gong, Weimin
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2013, 69 : 69 - 72
  • [24] Isolation, purification, crystallization, and preliminary X-ray diffraction study of the crystals of HU protein from M-gallisepticum
    Nikolaeva, A. Yu.
    Timofeev, V. I.
    Boiko, K. M.
    Korzhenevskii, D. A.
    Rakitina, T. V.
    Dorovatovskii, P. V.
    Lipkin, A. V.
    CRYSTALLOGRAPHY REPORTS, 2015, 60 (06) : 880 - 883
  • [25] Crystallization and preliminary X-ray diffraction analysis of the two distinct types of zebrafish β2-microglobulin
    Chen, Zhaosan
    Zhang, Nianzhi
    Lu, Shuangshuang
    Tariq, Mansoor
    Wang, Junya
    Xia, Chun
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2015, 71 : 794 - 798
  • [26] Expression, purification, crystallization and preliminary X-ray diffraction analysis of the pectin methylesterase from the sugar cane weevil Sphenophorus levis
    Evangelista, Danilo Elton
    de Godoy, Andre Schutzer
    Pereira de Paula, Fernando Fonseca
    Henrique-Silva, Flavio
    Polikarpov, Igor
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2014, 70 : 331 - 334
  • [27] Crystallization and preliminary X-ray diffraction analysis of a fatty-acid metabolism regulatory protein, FadR, from Bacillus halodurans
    Park, Young Woo
    Yeo, Hyun Ku
    Lee, Jae Young
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2012, 68 : 975 - 977
  • [28] Crystallization and Preliminary X-Ray Diffraction Analysis of Recombinant Phosphoribosylpyrophosphate Synthetase I from Thermus thermophilus HB27
    Abramchik, Yu. A.
    Timofeev, V. I.
    Zhukhlistova, N. E.
    Shevtsov, M. B.
    Fateev, I. V.
    Kostromina, M. A.
    Zayats, E. A.
    Kuranova, I. P.
    Esipov, R. S.
    CRYSTALLOGRAPHY REPORTS, 2022, 67 (04) : 586 - 589
  • [29] Cloning, recombinant production, crystallization and preliminary X-ray diffraction analysis of a family 101 glycoside hydrolase from Streptococcus pneumoniae
    Gregg, Katie J.
    Boraston, Alisdair B.
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2009, 65 : 133 - 135
  • [30] Crystallization and preliminary X-ray analysis of NADH:rubredoxin oxidoreductase from Clostridium acetobutylicum
    Nishikawa, Koji
    Shomura, Yasuhito
    Kawasaki, Shinji
    Niimura, Youichi
    Higuchi, Yoshiki
    ACTA CRYSTALLOGRAPHICA SECTION F-STRUCTURAL BIOLOGY COMMUNICATIONS, 2010, 66 : 23 - 25