Ab initio phasing of the diffraction of crystals with translational disorder

被引:11
|
作者
Morgan, Andrew J. [1 ,5 ]
Ayyer, Kartik [1 ,6 ,7 ]
Barty, Anton [1 ]
Chen, Joe P. J. [2 ]
Ekeberg, Tomas [1 ,8 ]
Oberthuer, Dominik [1 ]
White, Thomas A. [1 ]
Yefanov, Oleksandr [1 ]
Chapman, Henry N. [1 ,3 ,4 ]
机构
[1] Deutsch Elektronen Synchrotron DESY, Ctr Free Electron Laser Sci, Notkestr 85, D-22607 Hamburg, Germany
[2] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[3] Univ Hamburg, Dept Phys, Luruper Chaussee 149, D-22761 Hamburg, Germany
[4] Ctr Ultrafast Imaging, Luruper Chaussee 149, D-22761 Hamburg, Germany
[5] Univ Melbourne, Sch Phys, ARC Ctr Excellence Adv Mol Imaging Sch Phys, Parkville, Vic 3010, Australia
[6] Max Planck Inst Struct & Dynam Matter, Luruper Chaussee 149, D-22761 Hamburg, Germany
[7] Ctr Free Electron Laser Sci, Luruper Chaussee 149, D-22761 Hamburg, Germany
[8] Uppsala Univ, Dept Cell & Mol Biol, Lab Mol Biophys, Husargatan 3,Box 596, S-75124 Uppsala, Sweden
来源
ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES | 2019年 / 75卷
基金
澳大利亚研究理事会;
关键词
X-ray diffraction; diffuse scattering; phase retrieval; macromolecular crystallography; ITERATIVE PROJECTION ALGORITHMS; PROTEIN CRYSTALS; RECONSTRUCTION; OBJECT; UNIQUENESS; RETRIEVAL; MODULUS;
D O I
10.1107/S2053273318015395
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
To date X-ray protein crystallography is the most successful technique available for the determination of high-resolution 3D structures of biological molecules and their complexes. In X-ray protein crystallography the structure of a protein is refined against the set of observed Bragg reflections from a protein crystal. The resolution of the refined protein structure is limited by the highest angle at which Bragg reflections can be observed. In addition, the Bragg reflections alone are typically insufficient (by a factor of two) to determine the structure ab initio, and so prior information is required. Crystals formed from an imperfect packing of the protein molecules may also exhibit continuous diffraction between and beyond these Bragg reflections. When this is due to random displacements of the molecules from each crystal lattice site, the continuous diffraction provides the necessary information to determine the protein structure without prior knowledge, to a resolution that is not limited by the angular extent of the observed Bragg reflections but instead by that of the diffraction as a whole. This article presents an iterative projection algorithm that simultaneously uses the continuous diffraction as well as the Bragg reflections for the determination of protein structures. The viability of this method is demonstrated on simulated crystal diffraction.
引用
收藏
页码:25 / 40
页数:16
相关论文
共 50 条
  • [1] Ab initio phasing using diffraction data from different crystal forms
    Arnal, Romain D.
    Metz, Markus
    Morgan, Andrew J.
    Chapman, Henry N.
    Millane, Rick P.
    2019 INTERNATIONAL CONFERENCE ON IMAGE AND VISION COMPUTING NEW ZEALAND (IVCNZ), 2019,
  • [2] Patterson superposition and ab initio phasing
    Sheldrick, GM
    MACROMOLECULAR CRYSTALLOGRAPHY, PT A, 1997, 276 : 628 - 641
  • [3] Ab initio phasing in protein crystallography
    van der Plas, JL
    Millane, RP
    IMAGE RECONSTRUCTION FROM INCOMPLETE DATA, 2000, 4123 : 249 - 260
  • [4] Ab initio phasing of X-ray powder diffraction patterns by charge flipping
    Wu, Jinsong
    Leinenweber, Kurt
    Spence, John C. H.
    O'Keeffe, Michael
    NATURE MATERIALS, 2006, 5 (08) : 647 - 652
  • [5] Ab initio phasing of X-ray powder diffraction patterns by charge flipping
    Jinsong Wu
    Kurt Leinenweber
    John C. H. Spence
    Michael O'Keeffe
    Nature Materials, 2006, 5 : 647 - 652
  • [6] REAL SPACE AB INITIO PHASING OF PROTEIN CRYSTALS WITH HIGH RESOLUTION DATA.
    Matsugaki, N.
    Shiono, M.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 1999, 55 : 252 - 252
  • [7] Ab Initio phasing with ARCIMBOLDO: Lost in translation
    Rodriguez, Dayte
    de Ilarduya, Inaki M.
    Uson, Isabel
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2010, 66 : S15 - S15
  • [8] A fragmentation and reassembly method for ab initio phasing
    Shrestha, Rojan
    Zhang, Kam Y. J.
    ACTA CRYSTALLOGRAPHICA SECTION D-STRUCTURAL BIOLOGY, 2015, 71 : 304 - 312
  • [9] Advances in the ab initio VLD phasing algorithm
    Burla, M. C.
    Carrozzini, B.
    Cascarano, G. L.
    Giacovazzo, C.
    Polidori, G.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2011, 67 : C597 - C597
  • [10] ARCIMBOLDO, an ab initio approach to MR phasing
    Uson, Isabel
    Sammito, Massimo
    Millan, Claudia
    Borges, Rafael J.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2015, 71 : S20 - S21