Hydration Structure of the Quaternary Ammonium Cations

被引:32
作者
Babiaczyk, Wojtek Iwo [1 ,2 ]
Bonella, Sara [2 ,3 ]
Guidoni, Leonardo [2 ,4 ]
Ciccotti, Giovanni [5 ]
机构
[1] Univ Roma La Sapienza, Dipartimento Sci Biochim A Rossi Fanelli, I-00185 Rome, Italy
[2] Univ Roma La Sapienza, Dipartimento Fis, I-00185 Rome, Italy
[3] Univ Roma La Sapienza, CNISM Unit 1, I-00185 Rome, Italy
[4] Univ Aquila, Dipartimento Chim Ingn Chim & Mat, I-67100 Laquila, Italy
[5] Univ Coll Dublin, Sch Phys, Dublin 4, Ireland
基金
欧洲研究理事会;
关键词
MOLECULAR-DYNAMICS; EFFICIENT GENERATION; WATER-STRUCTURE; AM1-BCC MODEL; TEA BLOCKADE; FORCE-FIELD; FREE-ENERGY; ION; PROTEINS;
D O I
10.1021/jp106282w
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Two indicators of the hydropathicity of small solutes are introduced and tested by molecular dynamics simulations. These indicators are defined as probabilities of the orientation of water molecules' dipoles and hydrogen bond vectors, conditional on a generalized distance from the solute suitable for arbitrarily shaped molecules. Using conditional probabilities, it is possible to distinguish features of the distributions in close proximity of the solute. These regions contain the most significant information on the hydration structure but cannot be adequately represented by using, as is usually done, joint distance-angle probability densities. Our calculations show that using our indicators a relative hydropathicity scale for the interesting test set of the quaternary ammonium cations can be roughly determined.
引用
收藏
页码:15018 / 15028
页数:11
相关论文
共 39 条
  • [1] A cation-π interaction between extracellular TEA and an aromatic residue in potassium channels
    Ahern, Christopher A.
    Eastwood, Amy L.
    Lester, Henry A.
    Dougherty, Dennis A.
    Horn, Richard
    [J]. JOURNAL OF GENERAL PHYSIOLOGY, 2006, 128 (06) : 649 - 657
  • [2] Hydration structure and free energy of biomolecularly specific aqueous dications, including Zn2+ and first transition row metals
    Asthagiri, D
    Pratt, LR
    Paulaitis, ME
    Rempe, SB
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2004, 126 (04) : 1285 - 1289
  • [3] Water as an active constituent in cell biology
    Ball, Philip
    [J]. CHEMICAL REVIEWS, 2008, 108 (01) : 74 - 108
  • [4] MOLECULAR-DYNAMICS WITH COUPLING TO AN EXTERNAL BATH
    BERENDSEN, HJC
    POSTMA, JPM
    VANGUNSTEREN, WF
    DINOLA, A
    HAAK, JR
    [J]. JOURNAL OF CHEMICAL PHYSICS, 1984, 81 (08) : 3684 - 3690
  • [5] BLOKZIJL W, 1993, ANGEW CHEM INT EDIT, V32, P1545, DOI 10.1002/anie.199315451
  • [6] Chemical physics of protein folding
    Brooks, CL
    Gruebele, M
    Onuchic, JN
    Wolynes, PG
    [J]. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 1998, 95 (19) : 11037 - 11038
  • [7] Case D.A., 2006, AMBER 9
  • [8] Interfaces and the driving force of hydrophobic assembly
    Chandler, D
    [J]. NATURE, 2005, 437 (7059) : 640 - 647
  • [9] Surface topography dependence of biomolecular hydrophobic hydration
    Cheng, YK
    Rossky, PJ
    [J]. NATURE, 1998, 392 (6677) : 696 - 699
  • [10] A 2ND GENERATION FORCE-FIELD FOR THE SIMULATION OF PROTEINS, NUCLEIC-ACIDS, AND ORGANIC-MOLECULES
    CORNELL, WD
    CIEPLAK, P
    BAYLY, CI
    GOULD, IR
    MERZ, KM
    FERGUSON, DM
    SPELLMEYER, DC
    FOX, T
    CALDWELL, JW
    KOLLMAN, PA
    [J]. JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (19) : 5179 - 5197