Computational, Experimental, and Clinical Evidence of a Specific but Peculiar Evolutionary Nature of (COVID-19) SARS-CoV-2

被引:6
|
作者
Goh, Gerard Kian-Meng [6 ]
Dunker, A. Keith [1 ]
Foster, James A. [2 ,3 ]
Uversky, Vladimir N. [4 ,5 ]
机构
[1] Indiana Univ Sch Med, Ctr Computat Biol & Bioinformat, Indianapolis, IN 46202 USA
[2] Univ Idaho, Dept Biol Sci, Moscow, ID 83844 USA
[3] Univ Idaho, Inst Bioinformat & Evolutionary Studies, Moscow, ID 83844 USA
[4] Univ S Florida, Morsani Coll Med, USF Hlth Byrd Alzheimers Res Inst, Dept Mol Med, Tampa, FL 33620 USA
[5] Russian Acad Sci, Fed Res Ctr, Inst Biol Instrumentat, Lab New Methods Biol,Pushchino Sci Ctr Biol Res, Pushchino 142290, Russia
[6] Gohs BioComp, Singapore 548957, Singapore
关键词
pangolin; intrinsic; disorder; protein; nucleocapsid; virulence; shell; COVID; coronavirus; vaccine; immune; antibody; nucleoprotein; membrane; matrix; attenuate; severe acute respiratory; omicron; MOLECULAR RECOGNITION FEATURES; INTRINSIC DISORDER; PROTEINS; NUCLEOPROTEIN; VIRULENCE; BINDING; VIRUS; ROLES; MORFS;
D O I
10.1021/acs.jproteome.2c00001
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
The shell disorder models have predicted that SARS-CoV-2 is of a specific but peculiarevolutionary nature. All coronaviruses (CoVs) closely related to SARS-CoV-2 have been found to have thehardest outer shells (M protein) among CoVs. This hard shell (low M percentage of intrinsic disorder(PID)) is associated with burrowing animals, for example, pangolins, and is believed to be responsible forthe high contagiousness of SARS-CoV-2 because it will be more resistant to antimicrobial enzymes found insaliva/mucus. Incoming clinical and experimental data do support this along with a prediction based onanother aspect of the shell (N, inner shell) disorder models that SARS-CoV-1 is more virulent than SARS-CoV-2 because SARS-CoV-2 produces fewer virus copies in vital organs even if large amounts of infectionsparticles are shed orally and nasally. A phylogenetic study using M reveals a closer relationship of SARS-CoV to pangolin-CoVs than the bat-RaTG13 found in Yunnan, China. Previous studies may have beenconfused by recombinations that were poorly handled. The shell disorder models suggest that a pangolin-CoV strain may have entered the human population in 2017 or before as an attenuated virus, which couldexplain why SARS-CoV is found to be highly adapted to humans
引用
收藏
页码:874 / 890
页数:17
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