A simulation model for amphiphilic molecules in a mesoscale solvent

被引:3
作者
Inoue, Yasuhiro [1 ]
Takagi, Shu [2 ]
Matsumoto, Yoichiro [2 ]
机构
[1] RIKEN, VCAD Syst Res Program, Computat Cell Biomech Team, Wako, Saitama 3510198, Japan
[2] Univ Tokyo, Dept Mech Engn, Bunkyo Ku, Tokyo 1138656, Japan
关键词
stochastic rotation dynamics; multi-particle collision dynamics; Amphiphilic fluid; vesicle;
D O I
10.1016/j.camwa.2007.08.017
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
We present a stochastic rotation dynamics model of amphiphilic molecules. Vesicle formation of amphiphilic molecules in a thermal fluctuating fluid is demonstrated in this paper. In the model, the interaction of amphiphilic molecules is represented by Lennard-Jones potentials, and stochastic rotation dynamics [T. Ihle, D.M. Kroll, Stochastic rotation dynamics: A Galilean-invariant mesoscopic model for fluid flow, Phys. Rev. E 63 (2001) 020201 (R)] of mesoscopic particles has been adopted to reproduce the correct hydrodynamics of solvent fluids at the macroscopic scale. The amphiphilic molecules and the solvent particles interact via Boltzmann sampling of a color potential as suggested in a previous paper [Y. Inoue, Y. Chen, H. Ohashi, A mesoscopic simulation model for immiscible multiphase fluids, J. Comput. Phys. 201 (2004) 1911 to reproduce a phase separation between hydrophobic atoms and solvent fluids. (c) 2007 Elsevier Ltd. All rights reserved.
引用
收藏
页码:1469 / 1480
页数:12
相关论文
共 13 条
[1]   Statistical mechanics of bilayer membrane with a fixed projected area [J].
Farago, O ;
Pincus, P .
JOURNAL OF CHEMICAL PHYSICS, 2004, 120 (06) :2934-2950
[2]   Immiscible real-coded lattice gas [J].
Hashimoto, Y ;
Chen, Y ;
Ohashi, H .
COMPUTER PHYSICS COMMUNICATIONS, 2000, 129 (1-3) :56-62
[3]  
Holmberg K., 2003, SURFACTANTS POLYM AQ, V2nd
[4]  
Ihle T, 2001, PHYS REV E, V63, DOI 10.1103/PhysRevE.63.020201
[5]   A mesoscopic simulation model for immiscible multiphase fluids [J].
Inoue, Y ;
Chen, Y ;
Ohashi, H .
JOURNAL OF COMPUTATIONAL PHYSICS, 2004, 201 (01) :191-203
[6]   Mesoscopic model for solvent dynamics [J].
Malevanets, A ;
Kapral, R .
JOURNAL OF CHEMICAL PHYSICS, 1999, 110 (17) :8605-8613
[7]   Molecular dynamics simulation of the formation, structure, and dynamics of small phospholipid vesicles [J].
Marrink, SJ ;
Mark, AE .
JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 2003, 125 (49) :15233-15242
[8]   Structure of lipid bilayers [J].
Nagle, JF ;
Tristram-Nagle, S .
BIOCHIMICA ET BIOPHYSICA ACTA-REVIEWS ON BIOMEMBRANES, 2000, 1469 (03) :159-195
[9]   Self-assembly of amphiphiles into vesicles: A Brownian dynamics simulation [J].
Noguchi, H ;
Takasu, M .
PHYSICAL REVIEW E, 2001, 64 (04) :7
[10]   A molecular dynamics method for simulations in the canonical ensemble (Reprinted from Molecular Physics, vol 52, pg 255, 1984) [J].
Nosé, S .
MOLECULAR PHYSICS, 2002, 100 (01) :191-198