A hybrid explicit/implicit solvation method for first-principle molecular dynamics simulations
被引:77
作者:
Brancato, Giuseppe
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Univ Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Univ Naples Federico II, Complesso Univ MS Angeolo, INSTM, I-80126 Naples, ItalyUniv Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Brancato, Giuseppe
[1
,2
]
Rega, Nadia
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Univ Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Univ Naples Federico II, Complesso Univ MS Angeolo, INSTM, I-80126 Naples, ItalyUniv Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Rega, Nadia
[1
,2
]
Barone, Vincenzo
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Univ Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Univ Naples Federico II, Complesso Univ MS Angeolo, INSTM, I-80126 Naples, ItalyUniv Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
Barone, Vincenzo
[1
,2
]
机构:
[1] Univ Naples Federico II, Complesso Univ MS Angeolo, Dipartimento Chim, I-80126 Naples, Italy
[2] Univ Naples Federico II, Complesso Univ MS Angeolo, INSTM, I-80126 Naples, Italy
In this work, we present a hybrid explicit/implicit solvation model, well suited for first-principle's molecular dynamics simulations of solute-solvent systems. An effective procedure is presented that allows to reliably model a solute with a few explicit solvation shells, ensuring solvent bulk behavior at the boundary with the continuum. Such an approach is integrated with high-level ab initio methods using localized basis functions to perform first-principles or mixed quantum mechanics/molecular mechanics simulations within the extended-Lagrangian formalism. A careful validation of the model along with illustrative applications to solutions of acetone and glycine radical are presented, considering two solvents of different polarity, namely, water and chloroform. Results show that the present model describes dynamical and solvent effects with an accuracy at least comparable to that of conventional approaches based on periodic boundary conditions. (C) 2008 American Institute of Physics.